Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1681 ATGGAAATGGATTTGGTACCCAGTTGCAAGGAAAAACTGACATATTTCCGCATAAAAGAGCTCAAAAATGTGCTAACTCAGTTAGGACTTTCAAAGCAGGGGAAGAAGCAGGATCTTGTTGATCGGATATTGGCCATTATCACAGATGAACAAGTTTCCAAAATGTGGGCCAAGAAGAATGCTGTCTCAAAAGAACAAGTGGCAAAATTAGTGGATGACACATATAGAAAAATGCAGATAGCTGGTGGTGCTACTGATCTAGCATCAAAGGATCAGGGTGCCTCAGATACTAGTAGTACTGTAAAAATTAAAGGTGAAATCGAAGATTCCTTTCAATCAGATACAAAGATTCGCTGTCTCTGTGGAAGTACACTGGAAACGGAACCACTAGTCAAGTGTGATGATCCAAGATGCCATGTGTGGCAGCACATCAGTTGTGTTATTATTCCTGAGAAACCTATTGAAGGAATCCCACCCGTTCCCGATAAATTTTATTGTGAACTCTGCCGACTCAGCCGTGCAGACCCGTTTTGGGTTTCAGTGGTGCACCCTTTGTTTCCTGTGAAGTTGAACCCAACTAGTATTTCAACTGATGGAACCAACCAAGTGCAGAGCTTGGAGAGAACTTTTCAACTTACACGGGCAGACAAGGACTTGTTATCAAAACAGGAATTTGATGTTCAGGCTTGGTGTATGCTTCTGAACGACAAGGTTTCATTCAGGATGCAATGGCCACAGTATACGGACCTGCAGGTCAATGGTGTTCCTGTTCGTGCAATTAACAGACCTGGTTCACAATTGCTTGGGGCTAATGGTCGTGATGATGGTCCAATTATCACGCCATATACAAAAGATGGAATCAATAAGATTTACTTAACAGGATGTGATGCTCGTGTTTTTTGTTTAGGGGTCCGTATTGTTAAAAGACGCAGTGTGCAACAGGTCCTAAACATAATTCCGAAGGAGCCTGACGGGGAGCTTTTTGAAGATGCCCTTGCACGTGTCTGTCGATGTGTTGGAGGCGGAAATGCAGATGACATTGCTGATAGTGACAGCGATTTGGAAGTGGTTTCAGATACTTTTACCATTAACCTCCGTTGTCCAATGAGTGGTTCAAGAATGAAGATTGCAGGAAGATTCAAGCCTTGTGTTCACATGGGTTGTTTTGATCTCGATGTTTTTGTGGAAATGAATCAAAGGTCAAGGAAGTGGCAATGTCCCATATGTCTAAAAAACTATGCTTTGGAGAATATCATCATTGACCCTTATTTTAATCGTATCACTTCTAAGATGATACGCTGTGGTGAAGAGGTTACAGAGGTTGAGGTGAAGCCTGATGGTTCTTGGCGTGTGAAGGCAAAGAGTGAAAATGAACAGCTAGAATTAGGAAATCTTGCACAATGGCACTCTCCTGACGGATCCCTCTGTATTTCCAATGATGGAGAAGTCAAAAGATTGGAAACATTGAAGCAAGTCAAACAGGAAGCTTCAGATACTCCTACTGCTTTAAAAATTGGCATAAGGAAAAATAGCAATGGAGTTTGGGAGGTCAGCAAACCGGAGGATACAAACACATCTTCTGGTAATAGATTGAAAGAGGTCTTTGGAAATCATGAACAGGTGATTATTCCAATGAGTAGCAGTGGCACTGGAAGTGGTCGGGATGGTGATGATCCTAGCGTAAATCAGGGTGGTAGTGGACATCTTGATTATTCTACTACCAATGTGGTTGAGTTGGATTCTCTATATCTCAATAATGGTGCTTCAGCTTATGGGTATACTGCACATAATACTTTTGCTCAAACAGATGGTACTGAAGTTATTGTTCTGAGTGATTCGGATGAAGACAATGACATATTGATAGCTCCTGCAGTTGCGAATAATAGGAACAACCAAACTGATGCTGTAGGAGATGGTTACTCAGTTCCACCACCTGGAATTGTTGATTCTTACATTGAAGATCACAGTCTTGGTGGAAATTCATGCTTGGGTCTTTTTCCTAATGAAGATGATTTTGGGATGCATTCCTCCCTGTGGTCATTGCCATCCGGAACTCAGGCTGGTCCAGGATTCCAATTATTTGGTTCTGATGCAGATGTATCAGATGCTTTGATCCATTTGCAGCATGGTTCTATTAATTGCTCCTCATCACTGAATGGTTATTCATTGGCTCCTGATGCTGCTCTGGGATGTAGTAATATACCAGATTCCTCTGCTGCTCCTGATTTAAATGGTGGTTTGGTTGACAATCCATTGGCTTTTGCTGGAGATGATCCCTCGCTTCAGATTTTTCTCCCCACAAGACCAACTGAATCATCAGTTCAGCATGAATCAAGAGATCAGGCAAATATGTCTAATGATGTCTGCACTGAGGATTGGATATCTCTTAGTCTTGGAGGCGCAGCCGGTGGTAGTAATGGCAATGCTTCCACTCAAAATGGGTTTAATTCTGGACTCCAAGTGCCAACTAGAGAAGCTGCCACGAATAATTTGGCTGCTCATTTGCTTCTTGGAGTGAATGATGATAGATCTGTCAAAACAAGTAGGCCAAGATCAGATAACCCTTTCTCATTTCCTCGGCAAAAACGTTCCGTGAGGCCCCGCCTGTATCTATCTATTGATTCCGAATCGGAGTAA 2637 0.4236 MEMDLVPSCKEKLTYFRIKELKNVLTQLGLSKQGKKQDLVDRILAIITDEQVSKMWAKKNAVSKEQVAKLVDDTYRKMQIAGGATDLASKDQGASDTSSTVKIKGEIEDSFQSDTKIRCLCGSTLETEPLVKCDDPRCHVWQHISCVIIPEKPIEGIPPVPDKFYCELCRLSRADPFWVSVVHPLFPVKLNPTSISTDGTNQVQSLERTFQLTRADKDLLSKQEFDVQAWCMLLNDKVSFRMQWPQYTDLQVNGVPVRAINRPGSQLLGANGRDDGPIITPYTKDGINKIYLTGCDARVFCLGVRIVKRRSVQQVLNIIPKEPDGELFEDALARVCRCVGGGNADDIADSDSDLEVVSDTFTINLRCPMSGSRMKIAGRFKPCVHMGCFDLDVFVEMNQRSRKWQCPICLKNYALENIIIDPYFNRITSKMIRCGEEVTEVEVKPDGSWRVKAKSENEQLELGNLAQWHSPDGSLCISNDGEVKRLETLKQVKQEASDTPTALKIGIRKNSNGVWEVSKPEDTNTSSGNRLKEVFGNHEQVIIPMSSSGTGSGRDGDDPSVNQGGSGHLDYSTTNVVELDSLYLNNGASAYGYTAHNTFAQTDGTEVIVLSDSDEDNDILIAPAVANNRNNQTDAVGDGYSVPPPGIVDSYIEDHSLGGNSCLGLFPNEDDFGMHSSLWSLPSGTQAGPGFQLFGSDADVSDALIHLQHGSINCSSSLNGYSLAPDAALGCSNIPDSSAAPDLNGGLVDNPLAFAGDDPSLQIFLPTRPTESSVQHESRDQANMSNDVCTEDWISLSLGGAAGGSNGNASTQNGFNSGLQVPTREAATNNLAAHLLLGVNDDRSVKTSRPRSDNPFSFPRQKRSVRPRLYLSIDSESE* 879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1681 878 CDD PHD_Bye1p_SIZ1_like 118 169 - -
Lan8g1681 878 ProSiteProfiles Zinc finger SP-RING-type profile. 350 433 IPR004181 GO:0008270
Lan8g1681 878 MobiDBLite consensus disorder prediction 843 863 - -
Lan8g1681 878 SMART sap_9 13 47 IPR003034 -
Lan8g1681 878 MobiDBLite consensus disorder prediction 536 568 - -
Lan8g1681 878 Pfam SAP domain 16 44 IPR003034 -
Lan8g1681 878 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 342 451 IPR013083 -
Lan8g1681 878 CDD SP-RING_Siz_plant 364 412 - -
Lan8g1681 878 ProSiteProfiles SAP motif profile. 13 47 IPR003034 -
Lan8g1681 878 PANTHER ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN 11 816 - -
Lan8g1681 878 SUPERFAMILY SAP domain 3 66 IPR036361 -
Lan8g1681 878 Gene3D SAP domain 3 65 IPR036361 -
Lan8g1681 878 SUPERFAMILY FYVE/PHD zinc finger 111 173 IPR011011 -
Lan8g1681 878 SMART PHD_3 118 170 IPR001965 -
Lan8g1681 878 MobiDBLite consensus disorder prediction 541 568 - -
Lan8g1681 878 ProSitePatterns Zinc finger PHD-type signature. 119 169 IPR019786 -
Lan8g1681 878 PANTHER E3 SUMO-PROTEIN LIGASE SIZ1 11 816 - -
Lan8g1681 878 Pfam MIZ/SP-RING zinc finger 363 411 IPR004181 GO:0008270
Lan8g1681 878 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 107 175 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1681 Lan-Chr8 23720187 23733356 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lan8g1681 zf-MIZ 2.9e-19 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1681 - - gmx:100793735 1400.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0285 7 1828455 1838325 Lan8g1681 8 23720187 23733356 LSH
Lan6g1951 6 30453127 30465397 Lan8g1681 8 23720187 23733356 PCT
Lan3g0076 3 514417 524418 Lan8g1681 8 23720187 23733356 PCT
Lan8g1681 8 23720187 23733356 Lan6g1951 6 30453127 30465397 PCT
Lan8g1681 8 23720187 23733356 Lan3g0076 3 514417 524418 PCT