Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1678 ATGATGTCTGAAGAATCTTTTTCACTTCTTTCTAATACCGTAAGAAGCACCTTGCTTCATGTTCAAGATCCAAACTCAAACTCAAACCCTAATCCTAGTCCTAGTTCAAACCCATCCAAGAAAAAGAGAAACCTACCTGGAAACCCAGATCCAAGTTCGGAGGTAATATCTCTATCCCCAAAGTCTCTTATGGCAACGAACCGATTCATCTGTGAAATATGCAATAAGGGTTTCCAGAGAGAACAAAACTTACAGCTGCATCGGCGAGGGCATAACCTACCATGGAAGCTGAAGCAGAGAGAAAACAATGATCAAGTGAGGAAGAAGGTTTATGTGTGCCCGGAGAAGAGTTGTGTGCACCATGACCCTTGTAGAGCACTAGGAGATTTAACAGGAATAAAGAAACACTATAGCAGAAAGCATGGGGAGAAGAAGTGGAAGTGTGAAAAGTGCTCTAGAAAATATGCAGTTCAATCAGATTGGAAGGCCCATAACAAGATTTGTGGGACTAGAGAGTACAAATGTGACTGTGGCACACTTTTCTCCAGGAAGGACAGTTTCATAACACACAGAGCCTTTTGTGATGCATTGACTGAAGAAAGTGTGAGAGTTCCTGGAGCTTTAAGTAACTTGAGAAGGGATATTCATTTGATCAATAATAGTACTACTCAAGTACCCAGAATCCCTCAGATTTTTCCAAGATTTCATTCAGGACTTGATGGTAATTCAGTTTCAGAACCATTGGAGTTCAATTATGCCAACAACTCTCAGCTTCAATGCTTCCCAAGAAAATTGAGTGCTTTCTCATCTAATGTAAACTCTGTTGCCTGCAACAACATGCCTGATTTAGTGGAAACAATGAACATGTTTGGGTCACCACCTCAACAAGAAACTCAGTGGCTGATGAATTACCGAGCATCATTCACAAGTGCTAATAACAACAACCTATCTATACCATTGCCTGCACAACTGCCACATGGCCTGAAGCAAGAACAAGAAGAAAACAAACAAGACTTGTCTTATATTACTGCAAACTCTGTGTACTTCAATAATCAGAATTCACAAGGTGGAGGAGGAGGCCCAACTCACATGTCAGCAGCAATATCACTGTTACATAAAGATAATGCATCATCCACCTTCGACAACAACAACCATAATGTCTTTGGCATGATTGGTTTTTCAGGGAAGGTGAATAATAATAACACTGTTGAGGTTCAGAAGTTTTTCAAGGAAGGAAACTTGAATCATGATCAGTTGGTGAGTTTAGAAGATGGTAGCACCAACCTTGGAGCTAGTGGGTTTTCAATGAATGACTCAAGCTCAAATAATAATAAAGACCAGTTTGGTTTAACAAGAGACTTTTTGGGTGTTGGAGATGAGTCAATAACAATAAGCAGGCCCTTTGATTTGACTGAGTTTAATGCAATAGGATCAGTCATGGATCTGCAAAGCAGCCACTATGGTGGACATTACTGCTAG 1479 0.4037 MMSEESFSLLSNTVRSTLLHVQDPNSNSNPNPSPSSNPSKKKRNLPGNPDPSSEVISLSPKSLMATNRFICEICNKGFQREQNLQLHRRGHNLPWKLKQRENNDQVRKKVYVCPEKSCVHHDPCRALGDLTGIKKHYSRKHGEKKWKCEKCSRKYAVQSDWKAHNKICGTREYKCDCGTLFSRKDSFITHRAFCDALTEESVRVPGALSNLRRDIHLINNSTTQVPRIPQIFPRFHSGLDGNSVSEPLEFNYANNSQLQCFPRKLSAFSSNVNSVACNNMPDLVETMNMFGSPPQQETQWLMNYRASFTSANNNNLSIPLPAQLPHGLKQEQEENKQDLSYITANSVYFNNQNSQGGGGGPTHMSAAISLLHKDNASSTFDNNNHNVFGMIGFSGKVNNNNTVEVQKFFKEGNLNHDQLVSLEDGSTNLGASGFSMNDSSSNNNKDQFGLTRDFLGVGDESITISRPFDLTEFNAIGSVMDLQSSHYGGHYC* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1678 492 ProSiteProfiles Zinc finger C2H2 type domain profile. 69 91 IPR013087 -
Lan8g1678 492 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 24 462 - -
Lan8g1678 492 SUPERFAMILY beta-beta-alpha zinc fingers 68 166 IPR036236 -
Lan8g1678 492 ProSitePatterns Zinc finger C2H2 type domain signature. 71 91 IPR013087 -
Lan8g1678 492 Gene3D Classic Zinc Finger 48 121 - -
Lan8g1678 492 Pfam Zinc-finger double-stranded RNA-binding 69 91 IPR022755 -
Lan8g1678 492 Gene3D Classic Zinc Finger 124 203 - -
Lan8g1678 492 PANTHER PROTEIN INDETERMINATE-DOMAIN 13-RELATED 24 462 - -
Lan8g1678 492 MobiDBLite consensus disorder prediction 1 43 - -
Lan8g1678 492 MobiDBLite consensus disorder prediction 1 55 - -
Lan8g1678 492 SMART c2h2final6 146 166 IPR013087 -
Lan8g1678 492 SMART c2h2final6 69 91 IPR013087 -
Lan8g1678 492 SMART c2h2final6 111 141 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1678 Lan-Chr8 23695828 23698021 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1678 16 209 IDZ Gene Family AT5G60470 75.500 8.11e-110 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan8g1678 zf-C2H2_jaz 2.5e-05 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g1678 8 23695828 23698021 Lan13g0374 13 2515557 2517726 LSH
Lan10g0128 10 784557 786855 Lan8g1678 8 23695828 23698021 PCT
Lan3g0077 3 529024 531596 Lan8g1678 8 23695828 23698021 PCT
Lan8g1678 8 23695828 23698021 Lan10g0128 10 784557 786855 PCT
Lan8g1678 8 23695828 23698021 Lan3g0077 3 529024 531596 PCT