Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1673 ATGAGTACTGAGGAAAATAAGCCTGAGACTTTGAGTGAGGAGGACCATGATGCTGCAACTTTTTCTTGCAGAACAACATTTTCTCTTCCTGTCCAAACGGTTGATGATCCTATGGGGATAACTGAAGAAACCGCGCACATTCCTCCTCGGAAGCAACACAATCTTCTCCTAGAAATACCCTCAAGAACACCAGAAGAGTGTTCCCAAGATTTTGTTGCAATTAAAGTGCCAATGTCACCAAGTCCAACTCCCACTCCCAAGCGAGTGAATTTTATTGTCGGTTCTCGCTCTGTTGATGCTCCAACAAATAATTCTCCTGCGCCTCCAACTCCAACGTCAAGAGGCAAATCATCCAGAAGAAGCATTCTACCAAAATTGAGCTTCAGGTATAGAACTCCAACAGATATTGAAAAGGCTATTACTGCAGCTCCAGAAGGTTCCTCTTCAGGCCATGGAGAAAAGCCTTCAATCTCAAGATCATTGTCCCTCTCTAAGATATTTACGCCTAGGATTAAGAGAACATCATCATTACCTGTAGAAGAAATCGGAGATGTAAACATAGAATCTGCTCATGGTGGAAGTGTTGTTGGTCCTCTAAATAAAAGAGAGGCTCAGGCACAAACAATGATAGCTCGCTCTCTTTCAGTGCCTGTCAACAACAAAGAAAAAAGCTTAAGGAGGATGGATACTTTTTTCCGCATTATTCCTTCTACTCCTCGAGTAAAGGAAGGAAATGAATTGATCACAGCCCCAACAACAGATACTGAAAATGACGATGCTGATGGTGAAGACATAGCTGAGGAAGAGGCTGTGTGTCGAATCTGTCTAGTTGATCTATGTGAAGGAGGTGAGACATTCAAGTTGGAATGCAGCTGCAAAGGTGAACTTGCTCTTGCTCATCAAGAATGTGCTATTAAATGGTTTAGTATCAAGGGTAACAAGACCTGCGATGTGTGCAAGGAGGAAGTTCGAAACCTACCTGTTACCCTATTACGGATCCAAAGTGTTCGGAATCAGAACAGTGGAGCATGGTCTCTGCATGAAGATGTAAGCGGATACAGGGTTTGGCAGGAAGTCCCTGTGCTTGTCATTGTTAGCATGCTTGCCTATTTCTGTTTTCTTGAGCAATTATTGGTTGGAAAAATGGGAACTGGTGCAATAGCCATATCTCTTCCATTTTCTTGTGTACTAGGTCTACTCTCCTCCATGACATCATCGACCATGGTGAAAAGCAGGTTCACCTGGATTTATGCATCTTTCCAGTTTGCTCTGGTGGTTCTCTTTGCACATATATTTTACTCCTTGGTTCATGTGCAAGCAGTTCTGTCAATTCTTCTTGCAACATTTGCTGGTTTTGGTGTGGTGATGAGTGGGAGTTCTATTCTTGTGGAGGCTTTTAGATGGAGAAGAAGATGGCAGTCTCCTCAACTCATGACACAACCACTACAAAACTCTCGACCGATAAACACGCCGCAGTCCGGCCCTGATGATGACACCACTCAAAATGTGGTGCAAGATCTACAGAACTCGAGCCGGAGCTGA 1542 0.4364 MSTEENKPETLSEEDHDAATFSCRTTFSLPVQTVDDPMGITEETAHIPPRKQHNLLLEIPSRTPEECSQDFVAIKVPMSPSPTPTPKRVNFIVGSRSVDAPTNNSPAPPTPTSRGKSSRRSILPKLSFRYRTPTDIEKAITAAPEGSSSGHGEKPSISRSLSLSKIFTPRIKRTSSLPVEEIGDVNIESAHGGSVVGPLNKREAQAQTMIARSLSVPVNNKEKSLRRMDTFFRIIPSTPRVKEGNELITAPTTDTENDDADGEDIAEEEAVCRICLVDLCEGGETFKLECSCKGELALAHQECAIKWFSIKGNKTCDVCKEEVRNLPVTLLRIQSVRNQNSGAWSLHEDVSGYRVWQEVPVLVIVSMLAYFCFLEQLLVGKMGTGAIAISLPFSCVLGLLSSMTSSTMVKSRFTWIYASFQFALVVLFAHIFYSLVHVQAVLSILLATFAGFGVVMSGSSILVEAFRWRRRWQSPQLMTQPLQNSRPINTPQSGPDDDTTQNVVQDLQNSSRS* 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1673 513 CDD RING_CH-C4HC3_MARCH 272 320 - -
Lan8g1673 513 SUPERFAMILY RING/U-box 268 323 - -
Lan8g1673 513 SMART ringv_2 271 320 IPR011016 GO:0008270
Lan8g1673 513 MobiDBLite consensus disorder prediction 96 128 - -
Lan8g1673 513 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 257 327 IPR013083 -
Lan8g1673 513 ProSiteProfiles Zinc finger RING-CH-type profile. 264 326 IPR011016 GO:0008270
Lan8g1673 513 PANTHER OS02G0165000 PROTEIN 30 493 - -
Lan8g1673 513 MobiDBLite consensus disorder prediction 481 513 - -
Lan8g1673 513 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 30 493 - -
Lan8g1673 513 MobiDBLite consensus disorder prediction 96 120 - -
Lan8g1673 513 Pfam RING-variant domain 272 319 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1673 Lan-Chr8 23663830 23668456 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1673 256 326 C3H Transcription Factor Family AT2G37950 45.833 3.15e-13 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1673 - - gmx:100788108 738.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0295 7 1896649 1900752 Lan8g1673 8 23663830 23668456 LSH
Lan6g1942 6 30385047 30389471 Lan8g1673 8 23663830 23668456 PCT
Lan8g1673 8 23663830 23668456 Lan6g1942 6 30385047 30389471 PCT