Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1662 ATGAAGGAAGGTGTTATTGAGAAGAGTTTGGATCCGCAGCTATGGCACGCGTGTGCAGGGAGTATGATTCAGATGCCTCAGTTAAACTCCAAAGTTTTCTACTTTCCACAAGGTCATGCTGAACACGCTCAAACAACTCTTGATCTCACACCCTCTTTGAGGATTCCACCACTCATTCTATGCACACTTGCCTCAGTGAAATTCATGGCAGACACTGAAACTGATGAAGTCTTTGCTAAGATGTGGTTGGTTCCTCTCAGAAATTCCAACCTTGATGACCTCAATGATGGTGATGTGGTTGAAAATTCAGAAAAGCCTGCATCTTTTGCCAAAACTTTAACCCAATCTGATGCTAATAATGGTGGGGGATTTTCTGTTCCAAGGTATTGTGCAGAAACTATTTTTCCTCGGCTTGATTACTCGGCTGAACCGCCGGTTCAGACCGTGGTTGCCAAGGATGTTCATGGTGAGCTTTGGAAGTTTAGGCATATTTATAGAGGCACGCCTCGGCGCCATTTGCTTACAACTGGTTGGAGCACTTTTGTGAACCAGAAGAAACTAGTTGCTGGTGATTCTGTGGTATTTTTAAGGGCTGAAAATGGGGATCTTTGTATCGGAATCCGTAGGGCAAAGAAGGGAATTGGTGGTAGTGCTGGTTCTGAGGTTTTATCTGGGTGGACCTCAGCTTCTGGACATGGAAATTGTGGTGTTGGACCTTATGGTGCATTCTCTTTTTTCTTAAAAGAGGAGAATAAGTTTTTGAGAAATGGTTGTGGTGGTAATGGTGGTGGTTTGGGTGGAAGAGTGAAGGTGAGGCCTGAAGCTGTTATGGAAGCTATGACATTGGCTTCAAGGAACCAGCCATTTGAGGTTCTTTATTATCCAAGAGCTAGCACTCCCGAGTTTTGCATTAAGGCTTCTGCTGTTAGGGATGCTATGAGAGTTCAATGGGACTCTGGAATGAGGTTTAAGATGCCCTTCGAAACCGAGGATTCTTCTAGGATAAGCTGGTTCATGGGGACTATAGCTTCTGTTCAAGTTGTCGATCCTATCAGATGGCCAAACTCCCCATGGCGACTCCTTCAGGTTACTTGGGATGAGCCGGATTTACTACAAAATGTGAAGCGTGTAAGCCCATGGTTGGTTGAATTGGTATCAAACATGCCAGTCATCAATCTCACACCCTTTTCTCCACCAAGGAAGAAGCCGAGGTTTCCACAACACCCTGATTTCCCCCTTGACGTTCAATTTCCGATACCAATGTTTTCAGGCATCCAGCATGGGTATAACAACCCCTTGTGTGGTTTATCTGATAACGCTCCTGCAGGCATACAGGGAGCCAGGCATGCTCACTATGGAATATCTCTTTCAGATATCCACCATAACAATAATAAACTGCAGTTGGGGTTGTTTCCAGCAAATATGCAGCAGCTTAATGTGATTTCAAATGCTAACTTGTCCAACCGTGTTAAAAGCAAAGAAAGCTTGTCATGCTTGCTTACCATAGGAAAATCTGATAAGACTTTGGAGAAATCTAACAATGTTGAGACAAAACAGTTTTTGCTTTTCGGTCAACCAATACTCACCGAGCAACAAATCTCTAGAAACTGTTCTAGGGATATGTTCTCTCATGATTTTGCTGGAAAAAAATCAATAGATGAGGTTAAGGACAAGGAAAGGTCCTTTTTTGGTGGTGCCAATCCTACACTTACACAACAGTTTCTACCTGGAAAAGCTTCTGCCGAGTTTACTTGGCAACTCGGCTTGGATACCGGTCATTGCAAGGTTTTCTTGGAGTCAGAAGATGTCGGACGGACCTTAGACCTATCAAGTCTCAGTTCTTATGAAGAGTTATACAGGAGACTTTCCAACATGTTTGGTATTCAAAGGTCTGAGATATTGAACCATGTGCTTTACCGGGATGCAACCGGTGCTGTTAAGAATATTGGAGAAGAACCCTTCAGTGAGTTCATGAAGACAGCAAAAAGATTGACAATTCTGATGGATTCAGGCAGCAAAAATATAAGAGGGACCTGGATTACAGGAACTCGAAATGGTGAACATGGGTTGGATGCATCAAATAAAACTGGTCCACTGAGCATATTTGCATAA 2112 0.4337 MKEGVIEKSLDPQLWHACAGSMIQMPQLNSKVFYFPQGHAEHAQTTLDLTPSLRIPPLILCTLASVKFMADTETDEVFAKMWLVPLRNSNLDDLNDGDVVENSEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVVAKDVHGELWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSVVFLRAENGDLCIGIRRAKKGIGGSAGSEVLSGWTSASGHGNCGVGPYGAFSFFLKEENKFLRNGCGGNGGGLGGRVKVRPEAVMEAMTLASRNQPFEVLYYPRASTPEFCIKASAVRDAMRVQWDSGMRFKMPFETEDSSRISWFMGTIASVQVVDPIRWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMPVINLTPFSPPRKKPRFPQHPDFPLDVQFPIPMFSGIQHGYNNPLCGLSDNAPAGIQGARHAHYGISLSDIHHNNNKLQLGLFPANMQQLNVISNANLSNRVKSKESLSCLLTIGKSDKTLEKSNNVETKQFLLFGQPILTEQQISRNCSRDMFSHDFAGKKSIDEVKDKERSFFGGANPTLTQQFLPGKASAEFTWQLGLDTGHCKVFLESEDVGRTLDLSSLSSYEELYRRLSNMFGIQRSEILNHVLYRDATGAVKNIGEEPFSEFMKTAKRLTILMDSGSKNIRGTWITGTRNGEHGLDASNKTGPLSIFA* 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1662 703 PANTHER AUXIN RESPONSE FACTOR 7 680 - -
Lan8g1662 703 Gene3D - 315 389 - -
Lan8g1662 703 SUPERFAMILY DNA-binding pseudobarrel domain 95 211 IPR015300 -
Lan8g1662 703 Gene3D - 107 211 IPR015300 -
Lan8g1662 703 Pfam B3 DNA binding domain 109 210 IPR003340 GO:0003677
Lan8g1662 703 Gene3D - 590 675 - -
Lan8g1662 703 CDD B3_DNA 108 209 IPR003340 GO:0003677
Lan8g1662 703 ProSiteProfiles PB1 domain profile. 591 671 IPR000270 GO:0005515
Lan8g1662 703 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 7 680 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lan8g1662 703 Pfam Auxin response factor 279 362 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lan8g1662 703 ProSiteProfiles B3 DNA-binding domain profile. 109 211 IPR003340 GO:0003677
Lan8g1662 703 SMART B3_2 109 211 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1662 Lan-Chr8 23586370 23589963 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1662 3 675 B3 DNA Binding Superfamily AT4G30080 56.295 0.0 723
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lan8g1662 B3 2.9e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1662 - - gmx:100814686 1036.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan10g0140 10 877054 881351 Lan8g1662 8 23586370 23589963 PCT
Lan3g0084 3 570039 573736 Lan8g1662 8 23586370 23589963 PCT
Lan8g1662 8 23586370 23589963 Lan10g0140 10 877054 881351 PCT
Lan8g1662 8 23586370 23589963 Lan3g0084 3 570039 573736 PCT