Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1661 ATGTTATATGCAGTAGGATATATCGCTGATATGAAGGATTGTTGGTTTTTGGACAACAATTTTAATGGTCTTTCAGATGGAATTTTTGATGATGTTGTGGAGTTTTTTGATTTTCCTATAGAAGATGCAGAGACTGATGTTGTAGAAGAAGATTGGGCTGCTCAATTTAAACACCTTGAAGAACCATCTGTTGGTGTTTTTTCGATATCTTCGTTTGGGCTATGTGATACAACTCAAAATGTGACTCCAAAACTCGGGGCTGGGAGCACTTCCTCTGCTTCTCTGGAAAAGACTGCAGGACCAACATATGACAAAACTACGCCGAACCAGAATGTCCCTTTTAACAGCAAAGATGTGCACAAATTTCGAACATACAGCCCCGTTTCTGTTTTTGAAAGCAGTAGTTCTTCCTCAGTTGAGAACTCCAACTTTGACTTACCTGTCATCCCATTGAAGCGCCCACGAGGCAAACGTTTGCGTCTCTCGAGCTTCAATCAACTATTATCACTGCCTTTCATCTCCCCTTCGCCGGATTTTGAAACACAGGCTTCGGGTAAATTGAAAACCAGAGTAAAAAGGCAGAGGAAAAAGGATCTCTTACTACTCCCTGATCATTGTGAGATGAAGAGATTGTTGTCACAAGAGTCAGATGTCTTCGGAAAATGCACACATTGCGAGGTGACAGAGACACCACAATGGAGAGAGGGACCTATGGGTCCAAAAACCCTATGCAATGCTTGCGGGGTTCGGTACAGGTCTGGCCGGCTCTTTCCGGAGTACCGGCCTGCAGCTAGCCCCACTTTCGTAGCATCATTGCACTCAAACTCTCACAAGAAGGTCATAGAAATGAGAAGTGGAGCTATCAAAAAGACTATTAGGGGTTCTGTGTTCTCTTTGTAG 900 0.4356 MLYAVGYIADMKDCWFLDNNFNGLSDGIFDDVVEFFDFPIEDAETDVVEEDWAAQFKHLEEPSVGVFSISSFGLCDTTQNVTPKLGAGSTSSASLEKTAGPTYDKTTPNQNVPFNSKDVHKFRTYSPVSVFESSSSSSVENSNFDLPVIPLKRPRGKRLRLSSFNQLLSLPFISPSPDFETQASGKLKTRVKRQRKKDLLLLPDHCEMKRLLSQESDVFGKCTHCEVTETPQWREGPMGPKTLCNACGVRYRSGRLFPEYRPAASPTFVASLHSNSHKKVIEMRSGAIKKTIRGSVFSL* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1661 299 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 221 279 - -
Lan8g1661 299 SMART GATA_3 216 266 IPR000679 GO:0006355|GO:0043565
Lan8g1661 299 PANTHER GATA TRANSCRIPTION FACTOR 13-RELATED 30 286 - -
Lan8g1661 299 Pfam GATA zinc finger 222 255 IPR000679 GO:0006355|GO:0043565
Lan8g1661 299 CDD ZnF_GATA 221 268 IPR000679 GO:0006355|GO:0043565
Lan8g1661 299 Gene3D - 214 295 IPR013088 GO:0006355|GO:0008270
Lan8g1661 299 MobiDBLite consensus disorder prediction 85 111 - -
Lan8g1661 299 ProSiteProfiles GATA-type zinc finger domain profile. 221 252 IPR000679 GO:0006355|GO:0043565
Lan8g1661 299 ProSitePatterns GATA-type zinc finger domain. 222 247 IPR000679 GO:0006355|GO:0043565
Lan8g1661 299 PANTHER GATA TRANSCRIPTION FACTOR 30 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1661 Lan-Chr8 23572820 23576376 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1661 18 284 C2C2-Gata Transcription Factor Family AT1G08010 38.989 6.76e-53 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lan8g1661 GATA 9.4e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1661 - - aprc:113853859 355.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g1661 8 23572820 23576376 Lan13g0383 13 2588202 2591459 LSH
Lan3g0085 3 580553 583322 Lan8g1661 8 23572820 23576376 PCT
Lan8g1661 8 23572820 23576376 Lan3g0085 3 580553 583322 PCT