Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1657 ATGAAGTTGCAGCTTAAAGTTGTTTTTGCTTTTGTTATTAGCTTGCTGTGGATTCAGTACTCACTGTGTGATGAACCTTCTGATACATCTGTCCTAAGCAAATGGAAATGTAGATGTTCTTCCTTCCAAGGGAACCAAAGATACTTGCTTGCTAATTGTTCGAAGTCATGTGATTGCCATTCAGATGCAGAACAGAGCGCGTCCGTATGGACATGCATATGTGATCCTGATGGATTTCCCCAAGTGGAAGCTGATGGTCATAACCGTAAATGCTTTAGTGCTTGCAACTGCAATTGGGGCGATGTCAGCACGTCACTAGGTTCAAAGAAACACATTTCGAGCAGGATTGTTGTAATTATTCTATTAATATGTGTTTTGTGCACAACCCTTGCGTTTCTGGCCTCGCTTACATTTTATGTCTACCGAAGAGACATTCAATCACTACTATTCTCATCAGATAAGGAAACAAGTAGTAAAGCCAACCTAATTAGTCTTAGGACATGGACTTCTTCAGTGCCAGAAACAAATTTAACTACAAATTCTCCTATTTGCCATATTACTGGATGCTTTCCGAATGCCTCTTTTATGTTTGGGAGCCGTAAAGAAACTTTTCGTGGAAATATTATTCAATTTTCGTTTGATGAACTAGAGAATGCCACTGAAAACTTTTCAGCTTCCAACCTAATTGGACTAGGTGGAAGTAGTTATGTATACCGTGGTTGGCTGAAAGATGGTAGTAATGTGGCAGTTAAGCGACTAAAAGATCAAGGAGGAGCAGAAGCAGACTCGGCATTTTTCAAAGAGATTGAACTATTATCTAGACTTCATCATTTTCATTTGGTGCCTTTACTTGGATACTGCTCAGAATTGAAAGGAAAACTTGTTCAGAGATTACTAGTGTTTGAGTACATGATTAATGGAAATTTGAGAGACTGTTTGGACGGAGTTTGTGGAGAAAATATGGGTTGGGCTACTCGTGTTACAATTGCGATAGGAGCTGCAAGAGGCTTGGAATATCTCCATGAAGCAGCTGCTCCAAGAATTCTTCACAGAGATGTCAAATCGTCAAACATTCTTCTGGATGAAAATTGGCAAGCAAAAATAACTGATCTTGGTATGGCTAAAAGCTTGAGATCTGATGACCTCCCCAGCTGTTCAAATTCTCCAGCTAGAATGCAGGGAACCTTCGGCTACTTTGCACCCGAGTATGCTATTGTTGGGAGAGCCTCTCTTGAGTCTGATGTATTCAGTTTTGGGGTGGTTCTTCTTGAGCTTATCAGTGGCCGACACCCCATCCACAAATCTACAGGCAAAGAAGAAAGCCTTGTTATATGGGCGGTTCCGCGCTTACAGGATAGTAGGCGAGTCATAACGGAGTTGGTTGATCCAAAATTGAAAGGAAATTTCCCAGAAGAAGAGGTGCAAATAATGGCATACTTAGCTAAGGACTGTTTGCTGTTGGATCCTGACAATCGACCAACCATGACCGAGGTTGTTCAAATTCTTTCTAGTATCTCCCCGGGAAAATCTAGGAAAAGAAGAAACATTTCTGCGAGCCTGTTTCAGGAACAAGAGGACACAACTAAACAAAGACAAGCTCCATCTCATAGTTCACTGACACTAGATATTGATCACAAAAATAAAGAAGTAGATGATAATGAAGAAAATTTTATCCACATGACTTCAAAAACTGAGGGATGGCATGCATCAGAAGAGGAAATGGTAGACCTAACTGAGCCTCGGTTTGAATCATTTTGCATGACAAGTGTCCATTCCTCTTGA 1782 0.4074 MKLQLKVVFAFVISLLWIQYSLCDEPSDTSVLSKWKCRCSSFQGNQRYLLANCSKSCDCHSDAEQSASVWTCICDPDGFPQVEADGHNRKCFSACNCNWGDVSTSLGSKKHISSRIVVIILLICVLCTTLAFLASLTFYVYRRDIQSLLFSSDKETSSKANLISLRTWTSSVPETNLTTNSPICHITGCFPNASFMFGSRKETFRGNIIQFSFDELENATENFSASNLIGLGGSSYVYRGWLKDGSNVAVKRLKDQGGAEADSAFFKEIELLSRLHHFHLVPLLGYCSELKGKLVQRLLVFEYMINGNLRDCLDGVCGENMGWATRVTIAIGAARGLEYLHEAAAPRILHRDVKSSNILLDENWQAKITDLGMAKSLRSDDLPSCSNSPARMQGTFGYFAPEYAIVGRASLESDVFSFGVVLLELISGRHPIHKSTGKEESLVIWAVPRLQDSRRVITELVDPKLKGNFPEEEVQIMAYLAKDCLLLDPDNRPTMTEVVQILSSISPGKSRKRRNISASLFQEQEDTTKQRQAPSHSSLTLDIDHKNKEVDDNEENFIHMTSKTEGWHASEEEMVDLTEPRFESFCMTSVHSS* 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1657 593 ProSitePatterns Protein kinases ATP-binding region signature. 229 251 IPR017441 GO:0005524
Lan8g1657 593 Gene3D Transferase(Phosphotransferase) domain 1 304 529 - -
Lan8g1657 593 SMART serkin_6 223 505 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan8g1657 593 ProSiteProfiles Protein kinase domain profile. 223 505 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan8g1657 593 ProSitePatterns Serine/Threonine protein kinases active-site signature. 348 360 IPR008271 GO:0004672|GO:0006468
Lan8g1657 593 CDD STKc_IRAK 229 505 - -
Lan8g1657 593 Pfam Protein kinase domain 225 500 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan8g1657 593 Gene3D Phosphorylase Kinase; domain 1 197 303 - -
Lan8g1657 593 PANTHER RECEPTOR-LIKE SERINE/THREONINE-KINASE NCRK PROTEIN 2 587 - -
Lan8g1657 593 SUPERFAMILY Protein kinase-like (PK-like) 204 502 IPR011009 -
Lan8g1657 593 PANTHER OS01G0253100 PROTEIN 2 587 IPR045271 GO:0004714|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1657 Lan-Chr8 23546282 23552324 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1657 1 590 Receptor kinase-like Gene Family AT2G28250 52.167 0.0 566
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XVI Lan8g1657 Pkinase 8e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1657 - - lang:109351663 952.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0308 7 2004568 2009883 Lan8g1657 8 23546282 23552324 LSH
Lan6g1931 6 30282614 30286901 Lan8g1657 8 23546282 23552324 PCT
Lan8g1657 8 23546282 23552324 Lan6g1931 6 30282614 30286901 PCT