Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1650 ATGAACAAAGTTGTTAGGTCAAATTTGAGGGTTCTTCTTGGAGATGTTGTGTCTGTGCACCAATGCCCAGATGTCAAGTATGGGGAGCATGTGCACATTCTGCCTCTTGATGATACCATTGAAGGTGTCACTGGCAATCTTTTTGACACTTACTTGAAACCTTATTTCATGGATGCTTATCGTCCGGTCAGAAAGGGAGATCTATTTCTCGTCCGAGGAGGGATGAGAAGCATAGAGTTCAAGGTCATAGAAACTTTACCTGGGGAATATTGTGTGGTTGCTCCAGACACTGAAATCTACTGTGAGGGGGATCCTGTGAAAAGGGAGAATGAGGAGAGGTTGGGTGAAGTTGGTTATGATGATGTCGGTGGTGTGAGGAGGCAAATGGCACAGATCCGTGAGTTGGTGGAGCTTCCATTGAGGCATCCACAACTTTTCAAGTCAATTGGTGTGAAACCACCCAAAGGAATTTTGCTGTATGGACCCCCAGGTTCTGGTAAGACATTAATTGCAAGAGCAGTTGCTAATGAAACTGGTGCTTTCTTCTTTTGTATTAATGGACCAGAGATTATGTCCAAACTGGCTGGAGAGAGTGAAAGTAATCTTAGGAAAGCATTCGAAGAAGCTGAAAAGAATGCTCCATCCATCATTTTTATTGATGAGATCGATTCTATTGCTCCCAAGAGAGAAAAGACAAATGGTGAAGTTGAAAGGAGGATTGTTTCTCAACTTTTGACTCTTATGGATGGATTAAAATCCCGTGCTCATGTTATTGTTATTGGTGCTACGAATCGTCCAAATAGCATTGACCCAGCATTGAGAAGGTTTGGCAGATTTGATAGGGAGATTGATATTGGTGTTCCTGATGAAGTTGGGCGACTTGAAGTACTTCGCATACATACCAAAAACATGAAGCTTTCTGATGATGTTGATTTAGAGAGAATTTCAAAAGATACTCATGGGTATGTTGGTGCGGACCTTGCTGCCCTTTGCACTGAAGCTGCCCTGCAATGCATTAGGGAAAAGATGGATGTAATTGATTTGGAAGACGAAACCATTGATGCTGAAATACTGAATTCTATGGCAGTTTCAAATGAGCATTTCCAGACAGCTCTAGGAACAAGCAATCCATCAGCTTTACGTGAAACTGTTGTTGAGGTGCCTAATGTTAGTTGGCAAGATATTGGAGGGCTTGAGAATGTCAAGCGTGAGCTGCAAGAGTCCTCTTCTATGGTCCACCCGGATGCGGCAAAACTTTGTTGGCCAAAGCAATTGCTAATGAATGTCAGTCAAGCTAACTTCATCAGTGTGAAAGGTCCTGAATTACTTACCATGTGGTTTGGTGAAAGTGAAGCCAATGTTCGAGAAATATTTGACAAGGCTAGACAATCGGCTCCGTGTGTCCTCTTCTTTGATGAGCTTGACTCCATTGCCACTCAGAGAGGAAGTAGTGGTGGGGATGCTGGTGGTGCTGCTGATAGAGTTCTGAACCAGCTTCTGACTGAAATGGACGGCATGAATGCAAAAAAGACTGTGTTCATAATTGGGGCAACCAATAGACCTGACATCATTGATTCGGAACTTCTTCGGCCAGGCCGTTTGGACCAATTGATCTATATTCCTCTTCCTGATGAGGGGTCACGTTATCAAATCTTCAAGGCCTGCATGAGGAAGTCACCTATCTCGAAAGATGTTGATTTGAGCGCGCTAGCTAAGTATACTCAAGGCTTCAGTGGTGCTGATATAACAGAGATATGTCAACGAGCTTGCAAATATGCTATTAGAGAAAACATAGAAAAGGACATAGAGCGAGAGAGGAAGAGCGCGGCAAATCCCGAGGCTATGGATGAAGACATTGATGATGATGTTTCCAAGATCAAGGCTACTCATTTTGAAGAGTCAATGAAGTACGCACGTAGGAGTGTGAGTGATGCCGATATACGCAAATATCAGGCATTTGCTCAGACCCTACAGCAATCAAGGGGGTTCGGCACTGAATTTCGGTTTCCAGAGACCGGAGGTAGGACTAATGGAACTGATCCCTTTGCAACTTCTGCTGCTGGGGTTGATGAAGATGATTTGTATAGTTAG 2091 0.4362 MNKVVRSNLRVLLGDVVSVHQCPDVKYGEHVHILPLDDTIEGVTGNLFDTYLKPYFMDAYRPVRKGDLFLVRGGMRSIEFKVIETLPGEYCVVAPDTEIYCEGDPVKRENEERLGEVGYDDVGGVRRQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERISKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVSNEHFQTALGTSNPSALRETVVEVPNVSWQDIGGLENVKRELQESSSMVHPDAAKLCWPKQLLMNVSQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSGGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDSELLRPGRLDQLIYIPLPDEGSRYQIFKACMRKSPISKDVDLSALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERKSAANPEAMDEDIDDDVSKIKATHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGTEFRFPETGGRTNGTDPFATSAAGVDEDDLYS* 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1650 696 Gene3D - 122 286 IPR027417 -
Lan8g1650 696 Gene3D - 546 654 - -
Lan8g1650 696 SMART AAA_5 153 289 IPR003593 -
Lan8g1650 696 SMART AAA_5 326 544 IPR003593 -
Lan8g1650 696 Pfam AAA+ lid domain 564 605 IPR041569 -
Lan8g1650 696 Pfam AAA+ lid domain 309 351 IPR041569 -
Lan8g1650 696 Pfam ATPase family associated with various cellular activities (AAA) 426 542 IPR003959 GO:0005524|GO:0016887
Lan8g1650 696 Pfam ATPase family associated with various cellular activities (AAA) 157 286 IPR003959 GO:0005524|GO:0016887
Lan8g1650 696 PANTHER CELL DIVISION CYCLE PROTEIN 48 HOMOLOG 1 675 - -
Lan8g1650 696 Gene3D - 288 379 - -
Lan8g1650 696 Gene3D - 25 121 - -
Lan8g1650 696 Gene3D - 1 24 - -
Lan8g1650 696 Pfam Cell division protein 48 (CDC48), domain 2 44 107 IPR004201 -
Lan8g1650 696 Gene3D - 380 542 IPR027417 -
Lan8g1650 696 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 388 655 IPR027417 -
Lan8g1650 696 SMART CDC48_2_2 42 108 IPR004201 -
Lan8g1650 696 ProSitePatterns AAA-protein family signature. 257 275 IPR003960 GO:0005524|GO:0016887
Lan8g1650 696 PANTHER AAA-FAMILY ATPASE 1 675 - -
Lan8g1650 696 SUPERFAMILY Cdc48 domain 2-like 24 115 IPR029067 -
Lan8g1650 696 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 117 378 IPR027417 -
Lan8g1650 696 CDD AAA 123 286 - -
Lan8g1650 696 MobiDBLite consensus disorder prediction 664 696 - -
Lan8g1650 696 CDD AAA 430 542 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1650 Lan-Chr8 23471142 23474584 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1650 359 601 Calmodulin-binding Proteins AT3G56690 42.803 8.05e-58 210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1650 K13525 - gmx:547850 1225.31