Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1648 ATGGGAAGAGCTCCTTGTTGTGACAAGGCAAATGTTAAGAGAGGGCCATGGTCACCTGAAGAAGATTCAAAGCTGAAAGAGTACATAGACAAACATGGAACTGGGGGGAATTGGATTGCTCTTCCTCACAAAGCTGGTCTCAAGAGATGTGGGAAAAGTTGCAGATTGAGATGGCTTAACTATCTCAGGCCCAACATTAAGCATGGAGAATTCTCTGATGAGGAAGACAGAATAATTTGCAGCCTCTATGTTAATATTGGGAGCAGGTGGTCAATTATAGCTGCTCAATTGCCAGGAAGGACCGATAATGATATCAAGAACTACTGGAACACCAAGTTAAAGAAAAAACTCATGGGTTTGCTTCCTTTATCTCATCAAAGAAAGCCTCCATTTCCATCTTCATCACATGATCAAAACCCATCACCTTCTCCTTCAATGTACAGTGACTACAACTGCAGCACCTCTTATTACATCCCACAAACCTTATCCTTCACAGATCTTGAACCTATTTCACTTCCTTCAACTAACTTTGCAACCACAAGTTGCACAACAACCTCACTTTCTCTACCCTTTTACCAAAGCCAAGACTCTACAATGGTTACTACTAGTGCTATTAGTCCCATGCAATGTTACTACCCAATGTTTGGAAGTGAAGGAAGTTGTAGTTCCTCTGATGGGAGCTGCACTCAGATCAAGCAAGAAGAGCAAGGTTATCAAAGCTACATGTCCACCTCATTTGATGAGTTCAACAACAAGACTATGTTTAGTTACAACATTAATGGTCGTGGTGGAAATATTAACCAATGGGATGAAAAGTCAAGTGGATGCTTTGGTCAAACACAAACTCCTTTAGAGAATTATTATGATCTTGAGGATATTAAACAAATGATTAGTAGTGGTAGCAGCAGTTTCATTAATATTGATGAAAACAAGAGTGAGGAGAATTGCATGTACTACTACCCAGATGAGTGCAACTGA 978 0.4018 MGRAPCCDKANVKRGPWSPEEDSKLKEYIDKHGTGGNWIALPHKAGLKRCGKSCRLRWLNYLRPNIKHGEFSDEEDRIICSLYVNIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMGLLPLSHQRKPPFPSSSHDQNPSPSPSMYSDYNCSTSYYIPQTLSFTDLEPISLPSTNFATTSCTTTSLSLPFYQSQDSTMVTTSAISPMQCYYPMFGSEGSCSSSDGSCTQIKQEEQGYQSYMSTSFDEFNNKTMFSYNINGRGGNINQWDEKSSGCFGQTQTPLENYYDLEDIKQMISSGSSSFINIDENKSEENCMYYYPDECN* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1648 325 PANTHER OS09G0431300 PROTEIN 1 303 - -
Lan8g1648 325 SMART sant 67 115 IPR001005 -
Lan8g1648 325 SMART sant 13 64 IPR001005 -
Lan8g1648 325 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Lan8g1648 325 Gene3D - 69 139 - -
Lan8g1648 325 PANTHER TRANSCRIPTION FACTOR RAX3 1 303 - -
Lan8g1648 325 CDD SANT 16 62 IPR001005 -
Lan8g1648 325 MobiDBLite consensus disorder prediction 127 146 - -
Lan8g1648 325 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Lan8g1648 325 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Lan8g1648 325 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Lan8g1648 325 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Lan8g1648 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Lan8g1648 325 MobiDBLite consensus disorder prediction 128 146 - -
Lan8g1648 325 CDD SANT 70 111 IPR001005 -
Lan8g1648 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Lan8g1648 325 Gene3D - 7 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1648 Lan-Chr8 23455192 23457011 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1648 1 119 MYB Transcription Factor Family AT5G57620 89.916 1.12e-78 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan8g1648 Myb_DNA-binding 2.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1648 K09422 - gmx:100796382 375.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g1924 6 30180658 30182589 Lan8g1648 8 23455192 23457011 PCT
Lan10g0149 10 954036 956140 Lan8g1648 8 23455192 23457011 PCT
Lan8g1648 8 23455192 23457011 Lan6g1924 6 30180658 30182589 PCT
Lan8g1648 8 23455192 23457011 Lan10g0149 10 954036 956140 PCT