Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1641 ATGAAACAGATACATTACCTGGAAAATGGCTCAGTTGAGGTTTACAGTAGAAATGCAGAACGGAACACTGGGAAGTTTCCTGATGTTGTTGCTGCAGTTTCAAGGTTAAAGAAATCAAATGTATCATCATTTATTCTTGATTGTGAACTTGTTGCATATGATCGTGCTAAGAAGAAAATCCTTCCTTTCCAGGTTCTTAGTACCCGGGCTCGCAAAAATGTTGCTATGAACGATATAAAGGTTGATGTTTGCATATTTTCTTTTGATTTGTTGTATCTTAATGGAAAAGCACTTCTTCAGGAAAATCTGAAAATCCGTAGAGAGTCCAAGTCAACTGAGGTCAGGAGTTATATTCGTAGAAAGGTATGGAATTGCATGAGTCGGGATCTGGGAAGAGGATTGCTGGCATTGGTCAGAACATATTGCTTTGGCTACGCTCTTGGTTGGAGCAAATTTAATTCTGGTGCCTGGCATCTCTATGCCTCTTTTGAGGAAGAACCTGGTTTCTTTCAGTTTGCAACAGCAATAATATCAAATGATGTTGAGGAAGTACAAAAGTTTCTCGACCAAGCTGTTGATGCAAGTTGTGAGGGATTAATTATTAAAACATTAAATGAAGATGCTACATATGAACCTTCGAAGCGGTCACTCAACTGGCTAAAGCTGAAGAAAGATTATATGGAAAATATAGGGGACTCACTAGATTTGGTACCTATTGCTGCTTTCCATGGTCGTGGGAAACGTACAGGAACTGGATTCTCTGAAGAAATGCTTGAAGAACGATCAGCCAGTCTTCGTTCTAAAGTGATTCCCAAGCCAAAGGCATACTATACATATGCAGAGACAATCAATCCTGATGTCTGGTTTGAAACCAGTGAGGTATGGGAGGTGAAAGCTGCAGACCTGACCATTAGCCCCGTTTATCGAGCTGCTGTGGGCATAGTAGATCCAAATAAGGGCATTTCACTTCGATTTCCGCGTCTACTTCGTGTGCGACCTGACAAAACTCCAGAAGAGGCCTCATCATCTGAGCAGGTTGCTGATATGTATAATGCTCAAAAACATAATAACTCGAACAACCAAGACGGTGATGAAGATGATTGA 1104 0.4076 MKQIHYLENGSVEVYSRNAERNTGKFPDVVAAVSRLKKSNVSSFILDCELVAYDRAKKKILPFQVLSTRARKNVAMNDIKVDVCIFSFDLLYLNGKALLQENLKIRRESKSTEVRSYIRRKVWNCMSRDLGRGLLALVRTYCFGYALGWSKFNSGAWHLYASFEEEPGFFQFATAIISNDVEEVQKFLDQAVDASCEGLIIKTLNEDATYEPSKRSLNWLKLKKDYMENIGDSLDLVPIAAFHGRGKRTGTGFSEEMLEERSASLRSKVIPKPKAYYTYAETINPDVWFETSEVWEVKAADLTISPVYRAAVGIVDPNKGISLRFPRLLRVRPDKTPEEASSSEQVADMYNAQKHNNSNNQDGDEDD* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1641 367 Pfam ATP dependent DNA ligase C terminal region 248 335 IPR012309 GO:0003910|GO:0006281|GO:0006310
Lan8g1641 367 CDD Adenylation_DNA_ligase_I_Euk 3 226 - -
Lan8g1641 367 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 3 110 - -
Lan8g1641 367 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 158 367 - -
Lan8g1641 367 Gene3D DNA ligase/mRNA capping enzyme 2 116 - -
Lan8g1641 367 SUPERFAMILY Nucleic acid-binding proteins 231 353 IPR012340 -
Lan8g1641 367 CDD OBF_DNA_ligase_I 231 352 - -
Lan8g1641 367 MobiDBLite consensus disorder prediction 342 358 - -
Lan8g1641 367 Gene3D - 247 354 IPR012340 -
Lan8g1641 367 PANTHER DNA LIGASE 1 158 367 - -
Lan8g1641 367 PANTHER DNA LIGASE 1 3 110 - -
Lan8g1641 367 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 3 229 - -
Lan8g1641 367 Pfam ATP dependent DNA ligase domain 159 223 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Lan8g1641 367 Pfam ATP dependent DNA ligase domain 3 109 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Lan8g1641 367 ProSitePatterns ATP-dependent DNA ligase signature 2. 197 223 IPR016059 GO:0003909
Lan8g1641 367 Gene3D - 156 231 - -
Lan8g1641 367 ProSiteProfiles ATP-dependent DNA ligase family profile. 76 250 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Lan8g1641 367 MobiDBLite consensus disorder prediction 333 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1641 Lan-Chr8 23372752 23376553 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1641 3 367 Core DNA Replication Machinery Family AT1G08130 60.925 1.39e-164 478
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1641 K10747 - lang:109354034 736.487