Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1640 ATGTTCCCGCCATTTATATCATCCTTTCATTTTCAGACCAACACTAACCCTTTTCCCTCTTCCCATCTCATGCTTTCAATTTCATTCCGACCATTCCTGTTTCGTCCCATTCTTCCTTCTCCGATTAGGGTTCCCTCTCTCTTCTCTCTTCCCCGCACCACCATGTCTAAACCACCCTCCGCCTTTGACGCTCTCATGTCCGCCGCACGCGCCGCCGCATCCAAGAAGAAACCCCCTCAGCCGACATCCTCTTCCCCCAAGAAGCGTAAATCTCCACCTCCCCAAACCCCTTCTCCTGCTTCGTCCTTAAACCCTAGCAGTCTCAAAACCCTTGATTCCTCTGCGCCACCCGCGCCCGAAACCCTAGAAAATCAAGAGAAGCTGCGGGAATCGGTGAAACCTGAACCGGCGAACAAGATTCGCAGTGTGACTAATTCTTCGCAGGAGAAGATCGCTGAATTGAAGAAACTAGCTCCACTGCTGAAAAAGAAACCGTCTGAGTTCAATCCTAGCTCTGTAGCTACCTGGGAGAAGGGCGATCCCGTTCCGTTTCTGTTCCTTTCTTTAGCGTTTGATATGATTTCAAAAGAAACAGGAAGAATCTTGATTACGGATATAGTGTGCAATCTTTTAAGGACTGTGATATATGCTACACCCGAGGACTTGATCCCGGTTGTTTATCTTTCTGCGAATAGGATTGCACCGGCACATGTCGGTTTGGAATTGGGAATCGGAGATGCTTCCATTATCAAGGCGCTTGCTGAGGCATGTGGAAGGACTGAAGCGCAGATTAAGAAGCAGTATAAGGAAAAAGGTGATTTGGGTATTGTCGCCCAAGCAAGCCGTTCGTCTCAGTCTATGATGCGGAAACCTGATGCCTTGACTATTAGGAAGGTTTTCAAAACCTTTCACCTTATTGCCAAGGAATCTGGAAAAGACAGTCAAGAGAAGAAAAAGAATCATATCAAGGCACTTCTTGTTGCTGCAACTGACTGTGAACCTCAATATCTAATCCGTTTATTACAGGCTAAGTTGCGAATTGGTTATGCTGAGCAAACTCTCCTAGCTGCATTAGGCCAAGCTGCAGTATACACTGAAGAACATTCTAAAGCACCTCCTCAAATTCAGTCTCCTTTCGAAGAGGCTTCAAAGATTGTTAAACAAGCCTATTCTGTTCTTCCGGACTATGACAAAATAGTATCTGCACTGCTTACACATGGTGTATGGGAGCTTCCAAATACATGCAACTTTACTCCTGGTGTTCCAGTTGGACCAATGCTGTCAAAAGCAACCAAAGGTGTATCTGAAGTTCTAAATAAATTTTAG 1326 0.457 MFPPFISSFHFQTNTNPFPSSHLMLSISFRPFLFRPILPSPIRVPSLFSLPRTTMSKPPSAFDALMSAARAAASKKKPPQPTSSSPKKRKSPPPQTPSPASSLNPSSLKTLDSSAPPAPETLENQEKLRESVKPEPANKIRSVTNSSQEKIAELKKLAPLLKKKPSEFNPSSVATWEKGDPVPFLFLSLAFDMISKETGRILITDIVCNLLRTVIYATPEDLIPVVYLSANRIAPAHVGLELGIGDASIIKALAEACGRTEAQIKKQYKEKGDLGIVAQASRSSQSMMRKPDALTIRKVFKTFHLIAKESGKDSQEKKKNHIKALLVAATDCEPQYLIRLLQAKLRIGYAEQTLLAALGQAAVYTEEHSKAPPQIQSPFEEASKIVKQAYSVLPDYDKIVSALLTHGVWELPNTCNFTPGVPVGPMLSKATKGVSEVLNKF* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1640 441 MobiDBLite consensus disorder prediction 68 148 - -
Lan8g1640 441 MobiDBLite consensus disorder prediction 101 120 - -
Lan8g1640 441 PANTHER DNA LIGASE 1 74 441 - -
Lan8g1640 441 Pfam DNA ligase N terminus 183 358 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Lan8g1640 441 Gene3D - 160 427 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Lan8g1640 441 MobiDBLite consensus disorder prediction 85 100 - -
Lan8g1640 441 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 74 441 - -
Lan8g1640 441 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 165 416 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1640 Lan-Chr8 23369706 23376962 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1640 47 441 Core DNA Replication Machinery Family AT1G08130 59.024 6.41e-153 451
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1640 K10747 - gmx:100783155 514.998
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g1640 8 23369706 23376962 Lan13g0404 13 2771010 2777790 LSH