Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1638 ATGGAGAAGGGTCAAGGATTGGGCACAGAGGAACAGTTGGTGATCATGGCAAAGGGAAAACGCACCAAACGGTTGAGGCTTTTATCTCCTAATTGTGGTGTTGCTGGTGCCACATACACCCACTCAAGTGCTAATTCTGAGGATAGTTCCTCAACCACCACTTATGAAAGTACTGATCAACAAGATCAAGACTTGGCTAATTGTTTGATCCTTCTCGCTCGAGGAGGACCAGATTCCAATCATCATGATCATCAAAAACAGGATGATCATGACGATGATGATGATAATAACAACAAGATAGAAAAGGATGACTATGATGACGAGGATGGTAATATAGAGAAGGGTGGCAAGAGCACTACTAGTACTGGAAAACTTGTTGAGATGTCTACCTCTACAAACACTAACAAAGGCGGTGTCTATATTTATGAGTGCAAGACCTGTAACAGAACCTTCCCTTCCTTTCAAGCGTTGGGTGGTCATAGAGCTAGTCATAAAAGGCCCAAGCTCATGCTAATAGAAGAAAAGAAACCGTCACAACTGCAATTACAACCACAACCGCAACCACCAGTGATTATGAATTATGATCATTTTAAAGAAGCTGGGCAAGCACACATCAAACCTGACCTTTCAATTTCCATTCAATTGGAGAGCCACACCCATAAGGCCTTCCATGTCAACAAGGCCAAGATTCATGAATGTTCCATATGTGGCTCAGAATTCACATCAGGACAAGCATTGGGTGGACACATGAGGAGGCATAGAGCCACAAACAATACAACTCAGGTGGTTGCAGCACCAGTGCCGGCGTTGCAAGTGGAAGTTCAGCACCCGAAGAATTTATTAGAATTTGATCTTAACCTTCCGGCACCGGAAGAGGATCTTCCGGAGACCAAGTTTGTGTTGTCTGCTTCTCCGGCTTTGGTGGGTTGCCATTATTAG 939 0.4409 MEKGQGLGTEEQLVIMAKGKRTKRLRLLSPNCGVAGATYTHSSANSEDSSSTTTYESTDQQDQDLANCLILLARGGPDSNHHDHQKQDDHDDDDDNNNKIEKDDYDDEDGNIEKGGKSTTSTGKLVEMSTSTNTNKGGVYIYECKTCNRTFPSFQALGGHRASHKRPKLMLIEEKKPSQLQLQPQPQPPVIMNYDHFKEAGQAHIKPDLSISIQLESHTHKAFHVNKAKIHECSICGSEFTSGQALGGHMRRHRATNNTTQVVAAPVPALQVEVQHPKNLLEFDLNLPAPEEDLPETKFVLSASPALVGCHY* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1638 312 ProSiteProfiles Zinc finger C2H2 type domain profile. 142 169 IPR013087 -
Lan8g1638 312 SMART c2h2final6 231 253 IPR013087 -
Lan8g1638 312 SMART c2h2final6 142 164 IPR013087 -
Lan8g1638 312 MobiDBLite consensus disorder prediction 38 60 - -
Lan8g1638 312 ProSitePatterns Zinc finger C2H2 type domain signature. 233 253 IPR013087 -
Lan8g1638 312 MobiDBLite consensus disorder prediction 77 114 - -
Lan8g1638 312 PANTHER ZINC FINGER PROTEIN ZAT5 14 312 - -
Lan8g1638 312 ProSitePatterns Zinc finger C2H2 type domain signature. 144 164 IPR013087 -
Lan8g1638 312 ProSiteProfiles Zinc finger C2H2 type domain profile. 231 258 IPR013087 -
Lan8g1638 312 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 14 312 - -
Lan8g1638 312 MobiDBLite consensus disorder prediction 74 132 - -
Lan8g1638 312 Gene3D Classic Zinc Finger 207 273 - -
Lan8g1638 312 SUPERFAMILY beta-beta-alpha zinc fingers 141 253 IPR036236 -
Lan8g1638 312 Pfam C2H2-type zinc finger 231 255 - -
Lan8g1638 312 Pfam C2H2-type zinc finger 142 167 - -
Lan8g1638 312 MobiDBLite consensus disorder prediction 115 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1638 Lan-Chr8 23349539 23350951 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1638 1 312 C2H2 Transcription Factor Family AT2G28200 37.318 1.83e-49 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan8g1638 zf-C2H2_6 2.5e-11 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0326 7 2198645 2200458 Lan8g1638 8 23349539 23350951 LSH
Lan8g1638 8 23349539 23350951 Lan13g0408 13 2806499 2807657 LSH
Lan6g1913 6 30108517 30109343 Lan8g1638 8 23349539 23350951 PCT
Lan3g0098 3 677907 679108 Lan8g1638 8 23349539 23350951 PCT
Lan8g1638 8 23349539 23350951 Lan6g1913 6 30108517 30109343 PCT
Lan8g1638 8 23349539 23350951 Lan3g0098 3 677907 679108 PCT