Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1629 ATGTCTCGCCGCGGTGGCAGTTACCAACCTGAGCAACGCCGTGATCGTCCCTCTCCGTTGCAACCAACTCCTAGCGAAGTCGCCGGGAGAGGCCGAGGTCGTGGCCGAGGCCGTGGAATTTCTGGTCAAGGCCGTGGAGCGACTCATGCTCCGGCACCGGTGACCGGTTCTCCATCTCAGTCGCCTGTGTTTGATTCTCAACCTCCGGTGATCGGTTCTTCTTCACAGGCGCATGTTGCTCCTGCCTCTAGTTCTGTGACGGTTCCTCCTGCCGCATCTGTTGAGGTGGCTCCGCCAACGGCTTCGACTTCAGTGGAAGCCCTGACATCAGAGGTTGCGGAGCGGCTGACATTGAACGCTCCGGCGCCGGCGCCGGCGCCGTCTTCGTCGAAGGCTATTAGGTTTCCTAACCGCCCAAACTACGGGACACTCGGAAAGAAAATCAGAATTCGGGCGAATCATTTTCTCGTACAAGTTGCTGACCGTGATTTGCACCATTACGATGTTGCAATAAATCCTGAAGTTACTTCCAAGAAGGTTAATAGAGATATCATGACACAATTAGTTGAAACATATCGAGAGACACATTTAGGTAAGCGTACACCTGCTTACGATGGGCGTAAGAATCTTTACACTGGAGGTGCATTACCATTCTCATCAAGAGATTTTGTTGTTAAGTTGGCTGATCATGATAAACAAGCATCTTCTGAAGGTTCAGCAAGCAAAAAACGTGAACGTGAGTTTAAGGTCACCATCCGATTTGCATCAAAGCCCGACCTTCATCATCTTCAGCAATTCCTGAGGCGCCAACAGCTGGACTCTCCTCAAGAGACTATACAAGCTCTTGATGTTGTTTTGAGGGCTACACCTTCATTGAAGTATAATGTTGTGGGGAGTTCATTTTTTTCACCGGATTTGGGGATAAGTGGTTTACCTGGCAGTGGTATTGGTCCACTTGGCAGTGGTACAGAGTACTGGCGAGGATACTATCAAAGCCTTCGCCCAACACAGATGGGACTATCCCTGAATGTTGATGTTTCGGCGAGGGCATTCTATGAACCAATTCTTGTGTCTGACTTTCTTGTCAAACATTTTAAATTCAATTTTTCAAGACCACTGTCCAATCAAGATCGTATTAAGGTTAAGAAAGCACTGAGAGGAGTTAAGGTAGAGCTTATAGGCATTGGGGCTTCAAGAAGTTACAAAGTTTCTGGTATCTCAAAAGAGCCCCTGCGGGAGTTAACATTTACCTTGGATGACAAAAATACAAAAAAGACAGTTGTCCAGTATTTCTATGAGAAATATGATGTTCAGTTGAAGTATACAAATCTTCCTGCCGTCCAAGCTGGAAGTGACACAAAACCAGCCTACCTACCAATGGAGCTTTGTCAAATTGCTGCTGGACAGAGGTACACCAAGAGATTAAATGAGGACCAAGTCACTGCTCTTTTAAGAGCAACCTGTCAGCGTCCCCATGAAAGGGAAAATTACATTAAACAGATTTTGAGGAAGAACAATTTCAACACAGATAAGCTTGTGCATGACTTTGGAATTCAAGTAAATGAAGAGCTAGCGACGATTGAAGCCCGTGTCTTGCCTCCTCCAAGGCTTGTATATCATCAAACAGGGAAAGAATCAAGTGTTGACCCCTGGATGGGGCAGTGGAATATGATAAACAAGAAAATGATTGATGGTGGTAAGGTGCTACATTGGGCTTGTGTAAACTTTTCAACAAGAGTTAGCAGAGACTTGCCATCAACTTTTTGTTTTGAGCTAGTCAATATGTGTACCAGCAAAGGAATGGTTTTCGCTCGAGAGCCTTTGATACCAATCATTTCAGCTCAACCTTCTCAAATAGAGAAGGCTCTTGTGGATGTGCATAAGCAGTCTGTGAGTAAGCTTGCGAACATGAAGCAGGAGGGAAAATTAAAGCTGTTGATAATTATTTTGCCTGATGTCAAGGGGTCCTATGGAATAATAAAGCGTATTTGTGAAACTGAATTGGGAATAGTCTCTCAGTGCTGTCAGCCTAGGCAAGCTTCAAAATTGAGTAAACAGTACCTTGAAAATGTTTCCCTCAAGATAAATGTCAAGGTCGGTGGTCGAAACACAGTTTTGAATGATGCAATGCAGAGGAAAATTCCTCATGTGAGCGATCTGCCAACATTAATTTTGGGTGCAGATGTGACACATCCACAACCGGGAGAAGATTCCAGCCCCTCTATAGCTGCAGTTGTCGGATCAATGGACTGGCCTTGGGTCACAAAATACAGGGGAATTATTTCTGCTCAATCTCACCGCGAAGAAATTATTGAGGATCTTTATAAATCTTATCAAGATCCTAAGCGGGGATTGGTACATGGTGGAATGATCAGAGAGTTACTTAGAGCTTTCTACCAAACAGCAAGGGTTAAGCCTGCTAGGATTATATTCTACAGAGATGGTGTTAGTGAGGGTCAATTCAGTCAAGTTTTGCTTCACGAAATGGATGCAATAAGAAAGGCTTGTGTCTCGTTAGAAGAGGGATATCTACCCCCAGTTACCTTTGTGGTGGTACAGAAGAGACACCACACTCGATTTTTCCCCGTTGATCGGTCTCAGATGGATAAAAGTGGAAACATTATGCCAGGGACTGTTGTGGACACTTCTATCTGTCACCCTCGGGAACATGATTTTTATCTTAATAGCCATGCCGGGATTCAAGGAACAAGTCGGCCAACACATTATCATGTTTTGTATGATGAGAACAATTTCACTGCGGATGAGCTGCAAAGTTTTACAAATAACTTATGTTATACGTATGCAAGATGCACTCGATCTGTTTCAATAGTCCCTCCTGCTTATTATGCACACCTGGTTGCTTTCCGAGCTCGCTACTACATCGAAGGGGAATCATCAGATATAGGTTCTACAAGTGGTGGAAGTGGAAACAGGGTTTCTAACGTGATGGTGACTATGCCCTCAGTTATGGACAGCGTGAAAGAAGTGATGTTTTTCTGTTAA 3003 0.4459 MSRRGGSYQPEQRRDRPSPLQPTPSEVAGRGRGRGRGRGISGQGRGATHAPAPVTGSPSQSPVFDSQPPVIGSSSQAHVAPASSSVTVPPAASVEVAPPTASTSVEALTSEVAERLTLNAPAPAPAPSSSKAIRFPNRPNYGTLGKKIRIRANHFLVQVADRDLHHYDVAINPEVTSKKVNRDIMTQLVETYRETHLGKRTPAYDGRKNLYTGGALPFSSRDFVVKLADHDKQASSEGSASKKREREFKVTIRFASKPDLHHLQQFLRRQQLDSPQETIQALDVVLRATPSLKYNVVGSSFFSPDLGISGLPGSGIGPLGSGTEYWRGYYQSLRPTQMGLSLNVDVSARAFYEPILVSDFLVKHFKFNFSRPLSNQDRIKVKKALRGVKVELIGIGASRSYKVSGISKEPLRELTFTLDDKNTKKTVVQYFYEKYDVQLKYTNLPAVQAGSDTKPAYLPMELCQIAAGQRYTKRLNEDQVTALLRATCQRPHERENYIKQILRKNNFNTDKLVHDFGIQVNEELATIEARVLPPPRLVYHQTGKESSVDPWMGQWNMINKKMIDGGKVLHWACVNFSTRVSRDLPSTFCFELVNMCTSKGMVFAREPLIPIISAQPSQIEKALVDVHKQSVSKLANMKQEGKLKLLIIILPDVKGSYGIIKRICETELGIVSQCCQPRQASKLSKQYLENVSLKINVKVGGRNTVLNDAMQRKIPHVSDLPTLILGADVTHPQPGEDSSPSIAAVVGSMDWPWVTKYRGIISAQSHREEIIEDLYKSYQDPKRGLVHGGMIRELLRAFYQTARVKPARIIFYRDGVSEGQFSQVLLHEMDAIRKACVSLEEGYLPPVTFVVVQKRHHTRFFPVDRSQMDKSGNIMPGTVVDTSICHPREHDFYLNSHAGIQGTSRPTHYHVLYDENNFTADELQSFTNNLCYTYARCTRSVSIVPPAYYAHLVAFRARYYIEGESSDIGSTSGGSGNRVSNVMVTMPSVMDSVKEVMFFC* 1001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1629 1000 CDD PAZ_argonaute_like 357 466 - -
Lan8g1629 1000 SMART DUF1785_2 295 354 IPR014811 -
Lan8g1629 1000 MobiDBLite consensus disorder prediction 1 84 - -
Lan8g1629 1000 Gene3D - 714 1000 IPR036397 GO:0003676
Lan8g1629 1000 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 51 981 - -
Lan8g1629 1000 Gene3D - 531 708 - -
Lan8g1629 1000 Pfam Piwi domain 646 961 IPR003165 GO:0003676
Lan8g1629 1000 PANTHER ARGONAUTE1 51 981 - -
Lan8g1629 1000 MobiDBLite consensus disorder prediction 118 138 - -
Lan8g1629 1000 SUPERFAMILY Ribonuclease H-like 640 962 IPR012337 -
Lan8g1629 1000 SMART Piwi_a_2 645 962 IPR003165 GO:0003676
Lan8g1629 1000 Pfam N-terminal domain of argonaute 146 286 IPR032474 -
Lan8g1629 1000 SMART PAZ_2_a_3 359 483 IPR003100 GO:0005515
Lan8g1629 1000 Pfam Argonaute linker 2 domain 493 539 IPR032472 -
Lan8g1629 1000 Pfam Argonaute linker 1 domain 297 353 IPR014811 -
Lan8g1629 1000 Gene3D paz domain 349 471 - -
Lan8g1629 1000 ProSiteProfiles Piwi domain profile. 645 962 IPR003165 GO:0003676
Lan8g1629 1000 SUPERFAMILY PAZ domain 350 508 IPR036085 GO:0005515
Lan8g1629 1000 MobiDBLite consensus disorder prediction 53 84 - -
Lan8g1629 1000 Pfam Mid domain of argonaute 550 628 IPR032473 -
Lan8g1629 1000 CDD Piwi_ago-like 513 961 IPR045246 -
Lan8g1629 1000 Pfam PAZ domain 380 483 IPR003100 GO:0005515
Lan8g1629 1000 ProSiteProfiles PAZ domain profile. 371 467 IPR003100 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1629 Lan-Chr8 23248498 23254376 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1629 80 1000 Eukaryotic Initiation Factors Gene Family AT1G48410 56.131 0.0 1083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0337 7 2303241 2309110 Lan8g1629 8 23248498 23254376 LSH