Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1623 ATGGCTGGACCAATGGAGTTTTGGGGCGTTGAGGTAAAGGTAGGACAAGCGGTTAAAGTTGACAGAAATGATCTACTTGGCGAAACCATTCACCTTTCTCAAATTGCGTTGGGCGAGTCAAAGAAAGACAAAGCAAATGAACCTGTGGTTCTGTATTTGAAAGTTGGTGAACGAAAGTTTGTTTTGGGAACATTGATTAGGAATGATATTCCTCAACTCTCTGTAGATTTATTTCTGCACTCGGAGTTTGAGCTTTCGCATAATTCGAAAAATTCGAGTGTTTATTTTAGTGGATACAAAGTTGAAAATGACTTTAATAGTGTTTCTGACTTTTCTGATAGTGATGAAGATCTACCGATTTTGAACAAAGATGATGGAAAACTTGAAAAAAATGGTGACGATATAAAGGTTGTTGAATCTAAGAGACCTCCAGTCTCAATTGGTGCATCTGCAAAACAAGCCAAGATTGCTGTTCCAAAGAAAGATGAAGCAGATGAATCTGATGACGACGACGATTCTGATGACGAAGATGATTTTGGAAGCTCTGATGAGATGGATGATGATAGTGATATTGATGATGATAGTGACAGTGATGAAGATGAAGATGAATCTGAAGATGATGAAGAGACCCCTCTTAAGAAGGTGGATCAGGGCAAGAAGAGACCCAATGGATCTGCATCCAAAAATCCAGTTTCTATCAAGAAAGCTAAAAATGCTACTCCTGAGAACAACGGTGGTAAGAAAAGCTTGCATACAGCTTCTCCTCACCCTGTGAAGAAGGGTGGAAAGAATTCCAACAAGAAAGGACAACGCTCCTAA 819 0.3944 MAGPMEFWGVEVKVGQAVKVDRNDLLGETIHLSQIALGESKKDKANEPVVLYLKVGERKFVLGTLIRNDIPQLSVDLFLHSEFELSHNSKNSSVYFSGYKVENDFNSVSDFSDSDEDLPILNKDDGKLEKNGDDIKVVESKRPPVSIGASAKQAKIAVPKKDEADESDDDDDSDDEDDFGSSDEMDDDSDIDDDSDSDEDEDESEDDEETPLKKVDQGKKRPNGSASKNPVSIKKAKNATPENNGGKKSLHTASPHPVKKGGKNSNKKGQRS* 273
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1623 272 MobiDBLite consensus disorder prediction 111 130 - -
Lan8g1623 272 Gene3D Nucleoplasmin core domain 3 106 - -
Lan8g1623 272 PANTHER 32 KDA HEAT SHOCK PROTEIN-RELATED 5 268 - -
Lan8g1623 272 MobiDBLite consensus disorder prediction 116 130 - -
Lan8g1623 272 MobiDBLite consensus disorder prediction 139 272 - -
Lan8g1623 272 MobiDBLite consensus disorder prediction 164 209 - -
Lan8g1623 272 PANTHER HISTONE DEACETYLASE HDT3-LIKE ISOFORM X1 5 268 - -
Lan8g1623 272 MobiDBLite consensus disorder prediction 222 250 - -
Lan8g1623 272 Pfam Nucleoplasmin-like domain 7 100 IPR041232 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lan8g1623 Lan-Chr8 23199974 23202386 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1623 5 265 C2H2 Transcription Factor Family AT5G03740 37.276 8.71e-33 120
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0343 7 2352254 2355423 Lan8g1623 8 23199974 23202386 LSH
Lan6g2032 6 31074413 31077149 Lan8g1623 8 23199974 23202386 PCT
Lan10g0163 10 1065766 1068531 Lan8g1623 8 23199974 23202386 PCT
Lan3g0116 3 807707 811695 Lan8g1623 8 23199974 23202386 PCT
Lan8g1623 8 23199974 23202386 Lan6g2032 6 31074413 31077149 PCT
Lan8g1623 8 23199974 23202386 Lan10g0163 10 1065766 1068531 PCT
Lan8g1623 8 23199974 23202386 Lan3g0116 3 807707 811695 PCT