Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1607 ATGTATAGCAATTTCAAAGAGCAAGCAATAGAATACGTGAAACAAGCCGTACAAGAAGACAATGCAGGAAACTACGCAAAAGCCTTCCCTCTCTACATGAACGCCTTGGAGTATTTCAAGACTCACCTCAAGTACGAGAAAAACCCTAAGATCAAGGAAGCAATCACTCAGAAATTCACCGAGTATCTCCGCCGCGCCGAGGAGATCCGTGCTGTCCTCGACGACGGTGGCCCAGGCCCAGCATCCAACGGTGATGCTGCCGTTGCTACCAGGCCCAAGACAAAGCCCAAGGATGGGGAAGGAGGGGAAGGGGAGGATCCGGAACAGGCCAAGCTCAGGGCTGGTCTTAACTCTGCAATCATAAGGGAGAAGCCTAATGTTAATTGGAATGATGTTGCTGGATTAGAGAGCGCGAAACAGTCGTTGCAGGAGGCGGTTATTTTGCCTGTTAAGTTTCCTCAGTTCTTCACAGGTAAAAGACGGCCCTGGAGGGCATTTTTGTTGTATGGACCACCAGGAACAGGTAAATCATATTTGGCCAAGGCTGTTGCAACAGAAGCTGACTCCACTTTTTTCAGTATATCTTCCTCAGACTTGGTTTCAAAGTGGATGGGTGAAAGTGAAAAGCTGGTTTCAAACCTTTTCCAAATGGCTCGAGACAGTGCACCATCTATCATATTTATTGATGAAATAGACTCTCTATGTGGTCAACGTGGTGAAGGCAATGAGAGTGAAGCTTCAAGACGAATTAAAACTGAACTTTTGGTGCAGATGCAGGGTGTAGGAAACAATGATCAGAAAGTTCTTGTTCTTGCAGCAACAAATACACCTTATGCTCTAGACCAGGCAATAAGGAGGCGTTTTGATAAGCGTATTTATATTCCACTACCAGATGTGAAGGCTCGCCAACACATGTTCAAGGTGCATCTAGGAGATACTCCCCATAACTTGACTGAAGGTGATTTTGAACACCTAGCTCGCAAGACAGAGGGGTTTTCAGGTTCAGACGTAGCTGTCTGTGTGAAAGATGTTCTATTTGAACCTGTTCGCAAGACTCAAGATGCCATGTTTTTCTTTAAGAATCATGAGGGTATGTGGATCCCATGTGGACCTAAGCAACAGAGTGCAGTTCAAATTACAATGCAGGACCTTGCTGCAAAAGGACTTGCTTCTAAGATCCTTCCACCACCGATATCCAGAACAGATTTTGACAAGGTGCTTGCCAGACAAAGGCCCACAGTAAGCAAAAGTGACCTTGATGTTCATGAGAGATTCACAAAGGAGTTTGGAGAGGAAGGTTAA 1302 0.4555 MYSNFKEQAIEYVKQAVQEDNAGNYAKAFPLYMNALEYFKTHLKYEKNPKIKEAITQKFTEYLRRAEEIRAVLDDGGPGPASNGDAAVATRPKTKPKDGEGGEGEDPEQAKLRAGLNSAIIREKPNVNWNDVAGLESAKQSLQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSNLFQMARDSAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGNNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDVKARQHMFKVHLGDTPHNLTEGDFEHLARKTEGFSGSDVAVCVKDVLFEPVRKTQDAMFFFKNHEGMWIPCGPKQQSAVQITMQDLAAKGLASKILPPPISRTDFDKVLARQRPTVSKSDLDVHERFTKEFGEEG* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1607 433 MobiDBLite consensus disorder prediction 73 109 - -
Lan8g1607 433 MobiDBLite consensus disorder prediction 91 109 - -
Lan8g1607 433 Pfam Vps4 C terminal oligomerisation domain 366 430 IPR015415 -
Lan8g1607 433 Gene3D - 298 413 - -
Lan8g1607 433 PANTHER AAA DOMAIN-CONTAINING 1 433 - -
Lan8g1607 433 SMART smart 2 79 IPR007330 -
Lan8g1607 433 SUPERFAMILY MIT domain 2 81 IPR036181 -
Lan8g1607 433 CDD AAA 133 296 - -
Lan8g1607 433 Gene3D - 125 421 IPR027417 -
Lan8g1607 433 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 125 429 IPR027417 -
Lan8g1607 433 Gene3D - 6 75 - -
Lan8g1607 433 PANTHER AAA-TYPE ATPASE FAMILY PROTEIN 1 433 - -
Lan8g1607 433 Pfam MIT (microtubule interacting and transport) domain 7 70 IPR007330 -
Lan8g1607 433 ProSitePatterns AAA-protein family signature. 268 287 IPR003960 GO:0005524|GO:0016887
Lan8g1607 433 SMART AAA_5 162 298 IPR003593 -
Lan8g1607 433 Pfam ATPase family associated with various cellular activities (AAA) 167 296 IPR003959 GO:0005524|GO:0016887
Lan8g1607 433 CDD MIT_VPS4 4 77 IPR045253 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1607 Lan-Chr8 23038369 23043003 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1607 161 354 Calmodulin-binding Proteins AT3G56690 36.224 2.06e-35 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1607 K12196 - csv:101218878 808.135
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g1607 8 23038369 23043003 Lan13g0427 13 3069563 3074973 LSH
Lan6g2080 6 31419598 31423479 Lan8g1607 8 23038369 23043003 PCT
Lan10g0174 10 1119581 1122120 Lan8g1607 8 23038369 23043003 PCT
Lan3g0164 3 1056462 1060149 Lan8g1607 8 23038369 23043003 PCT
Lan8g1607 8 23038369 23043003 Lan6g2080 6 31419598 31423479 PCT
Lan8g1607 8 23038369 23043003 Lan10g0174 10 1119581 1122120 PCT
Lan8g1607 8 23038369 23043003 Lan3g0164 3 1056462 1060149 PCT