Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1603 ATGGGTTTGAGAGAATGCAATAATATTGGAGAGAACAAGAATCTCTACCTTCATGCACCAACTTTCATTGAATGGCTTAAACCATACAATTCCTCTCCTTCATATCTAATTCCCACAGAATCATCATCAACATCTTCTCCTTCTTCTTCTGTGACTCAGAATGAGTTTGTTCATGAAACTATTCAATTTTTGCCCATCTTAAATGGAAAACCCTTAAAAGAGGAAGAACTAAAAAAGGAGAGTTTTGAGGTAAAAGAAGAGAAAGTGGAACAAATGTCTGTGGCTTTGCATATTGGATTACCTAACACTATTACTGATGCTGAGTGTTCTGATGAGAAGAAAGTTTTCCATGTTAAGGAAGAAGAAGAATCCGTGAAGAAAACTTCATTGAATGGAAGCTCAGAGAGAAGGTTTTGGATACCAACTCCAGCACAAATACTTGTTGGGCCGATACAGTTTGCTTGTAATATATGCAGCAAGACCTTCAATAGGTATAACAACATGCAGATGCATATGTGGGGTCATGGATCCGAATATAGGAAAGGACCAGACTCACTAAAAGGAACACAACCAGCTGAAATGCTAGGGCTACCATGTTATTGTTGTGCACAAGGTTGCAAGAACAACATCAACCACTTAAGAGCAAAGCCCTTGAAGGACTTCAGAACACTCCAAACTCACTACAAAAGAAAGCATGGCACTAAACCATTCATGTGCAGAAAATGTGGCAAAACATTTGCTGTCAAAGGTGATTGGAGGACTCATGAGAAGAACTGTGGGAAGTTTTGGTATTGCACTTGTGGGTCAGATTTTAAGCATAAGAGATCTCTTAAGGATCACATTAGGTCCTTTGGTAAGGGTCATAACCCACGTCCTAATTCTCTTGAAGAATTGGATTGCATTACTGGGTCTGATTAA 918 0.39 MGLRECNNIGENKNLYLHAPTFIEWLKPYNSSPSYLIPTESSSTSSPSSSVTQNEFVHETIQFLPILNGKPLKEEELKKESFEVKEEKVEQMSVALHIGLPNTITDAECSDEKKVFHVKEEEESVKKTSLNGSSERRFWIPTPAQILVGPIQFACNICSKTFNRYNNMQMHMWGHGSEYRKGPDSLKGTQPAEMLGLPCYCCAQGCKNNINHLRAKPLKDFRTLQTHYKRKHGTKPFMCRKCGKTFAVKGDWRTHEKNCGKFWYCTCGSDFKHKRSLKDHIRSFGKGHNPRPNSLEELDCITGSD* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1603 305 ProSitePatterns Zinc finger C2H2 type domain signature. 155 175 IPR013087 -
Lan8g1603 305 SMART c2h2final6 153 175 IPR013087 -
Lan8g1603 305 SMART c2h2final6 200 232 IPR013087 -
Lan8g1603 305 SMART c2h2final6 237 257 IPR013087 -
Lan8g1603 305 Gene3D Classic Zinc Finger 196 286 - -
Lan8g1603 305 ProSiteProfiles Zinc finger C2H2 type domain profile. 153 180 IPR013087 -
Lan8g1603 305 PANTHER ZINC FINGER PROTEIN WIP2 1 302 IPR043584 GO:0003700|GO:0010468
Lan8g1603 305 Pfam Zinc finger, C2H2 type 153 172 IPR013087 -
Lan8g1603 305 SUPERFAMILY beta-beta-alpha zinc fingers 139 176 IPR036236 -
Lan8g1603 305 SUPERFAMILY beta-beta-alpha zinc fingers 223 257 IPR036236 -
Lan8g1603 305 Coils Coil 72 92 - -
Lan8g1603 305 Gene3D Classic Zinc Finger 150 175 - -
Lan8g1603 305 ProSiteProfiles Zinc finger C2H2 type domain profile. 237 257 IPR013087 -
Lan8g1603 305 PANTHER ZINC FINGER PROTEIN WIP3-LIKE 1 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1603 Lan-Chr8 22989381 22992357 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1603 8 302 C2H2 Transcription Factor Family AT1G08290 53.392 2.44e-112 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan8g1603 zf-C2H2_6 0.00024 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0359 7 2461450 2465061 Lan8g1603 8 22989381 22992357 LSH
Lan8g1603 8 22989381 22992357 Lan13g0429 13 3088865 3091822 LSH