Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1597 ATGTACCATCTTCACCAACATCAAGGAAAGAATACAAATTCTTCTTCATCTAGAATGACAATCCCTTCTTCTGATAGACATATGTTCCTTCAAACAGGAAATGGTTCTGTTGATTCTGGACTTGTACTCTCAACTGATGCTAAGCCTAGATTGAAATGGACACCAGATCTTCATGCTAGGTTTATAGAAGCAGTTCATCAGTTAGGTGGACCTGATAAAGCAACTCCAAAAACAGTGATGAAACTCATGGGAATTCCAGGGCTTACCTTATATCATCTGAAGAGTCATCTTCAGAAGTATAGATTGAGCAAGAATATGCATGGACAAAGCAACAATGTGACACACAAAATCAGTGCAGAAACGGGAGAAAGACACTTTGAGAATAATGGAACTCATATGAACAATTTAGACCTTGCACCTAAGGCTAACAAAGATTTGCACATAAGTGAGGCACTTCAGATGCAGATAGAGGTGCAGAGAAGACTAAATGAACAACTTGAGGTACAAAGACACTTGCAACTCCGCATAGAGTCTCAAGGAAAATACCTACAAGCAGTGCTAGAAAAAGCTCAAGAAACACTTGGTAGACAGAGTTTAGGAATAGTAGGAATTGAAGCTGCTAAAGTACAACTTTCTGAGCTTGTGTCCAAAGTATCCTCTCAGAGTCTGAACTCAGCATTTTCAGAACTGGAGGAATTACAAGGATTTAACCCTCATGATAAACAAACTAACCCACCAACTGATTATTCCATAGAAAGTTGCCTCACATCCTGTGAGGGATCACAAAAGGATCAGCAAGATATGAACTTAAGACCCTTCAATGGCCATAACAAATCTGAGTTCAATTGGTGTACTGATCAAGTGAAAAATAACAACTTTCTTGCCTCATTGAGCAAGAATCTAGAAAGAAGAAACTTTGTTGTGGAAAGAAGTCCTGGCAACTTATCTATGAGCATTGGAGTTGAAGGAGAAAAAGAAAATGGTGAATACAAACAAAGAAACTTAAACTCCATTAGAACAGAACCAGTGAAACTAGTGGCTGATGAGAAAGTTTCACAGGATTATAGATTGTCTTCTTACTTTGCATCAGCAAGATTGGACCTAAACAAGGGTGAAGATAATGAGCCTGCAACAAATTGTAAACAGCTAGACTTGAATGGATTCAGTTGGAGCTGA 1176 0.3852 MYHLHQHQGKNTNSSSSRMTIPSSDRHMFLQTGNGSVDSGLVLSTDAKPRLKWTPDLHARFIEAVHQLGGPDKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNMHGQSNNVTHKISAETGERHFENNGTHMNNLDLAPKANKDLHISEALQMQIEVQRRLNEQLEVQRHLQLRIESQGKYLQAVLEKAQETLGRQSLGIVGIEAAKVQLSELVSKVSSQSLNSAFSELEELQGFNPHDKQTNPPTDYSIESCLTSCEGSQKDQQDMNLRPFNGHNKSEFNWCTDQVKNNNFLASLSKNLERRNFVVERSPGNLSMSIGVEGEKENGEYKQRNLNSIRTEPVKLVADEKVSQDYRLSSYFASARLDLNKGEDNEPATNCKQLDLNGFSWS* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1597 391 Gene3D - 47 105 - -
Lan8g1597 391 SUPERFAMILY Homeodomain-like 47 103 IPR009057 -
Lan8g1597 391 MobiDBLite consensus disorder prediction 1 21 - -
Lan8g1597 391 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 48 103 IPR006447 GO:0003677
Lan8g1597 391 Pfam MYB-CC type transfactor, LHEQLE motif 147 193 IPR025756 -
Lan8g1597 391 PANTHER MYB-RELATED PROTEIN 2 4 391 - -
Lan8g1597 391 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 4 391 IPR044848 GO:0003700
Lan8g1597 391 Coils Coil 149 169 - -
Lan8g1597 391 Pfam Myb-like DNA-binding domain 50 101 IPR001005 -
Lan8g1597 391 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 45 105 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1597 Lan-Chr8 22944501 22947132 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1597 80 390 G2-like Transcription Factor Family AT3G04030 50.602 3.56e-92 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lan8g1597 Myb_DNA-binding 6e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1597 - - gmx:100810396 547.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0362 7 2488947 2491776 Lan8g1597 8 22944501 22947132 LSH
Lan3g0010 3 146412 150347 Lan8g1597 8 22944501 22947132 PCT
Lan8g1597 8 22944501 22947132 Lan3g0010 3 146412 150347 PCT