Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1594 ATGCCAAGGGAAAATGCAAATTCTTCACCAGTTGCTAAGCCTTCTGAGCCTGAAAAACCGGCAGAATCTGATGAGAGGGTCAATTTTACTGACGCAAATGATTCTGATGAAGAAATTGAATATGAAGAAATAGAAGTAGAAGAGGAGGTGGAAGAAGAGGAGGAGGAGGACCCAGAGGAGATAGAGGAAGAGGAGGAGGAAGAAGAGGTGGAGGAGGAGGAAGAGGTTGAAGAGGTGGAAGAAGATGATGCAAAAGTGGAAGATGAGAATGAGAAGAAAAAACATGCTGAACTTCTTTCTCTTCCTCCTCATGGGTCTGAAGTATACATTGGTGGCATTCCTCTTGATGTCTCAGATGAGGATTTGAAGGCTTTTTGTGAGCATATTGGGGAAGTTGCAGAGGTTCGCATCATGAAAGGAAAGGATGCTTCTGAGAACAAGGGCTTCTGTTTTGTGACTTTTAGAAGTGTGGAGTTGGCTTCTAAAGCCATTGAGGAGCTGAATAATAAAGAATTTAAGGGTAAAAAAATTAAATGTTCCACAGCTCAAGCGAAACACCGCCTTTTTATTGGTAATGTTCCTAGAAGCTGGGACGAGGAAGATCTGAGGAAGGTTGTAAGTGAGATTGGACCTGGTGTTACTTCTATAGAACTAGTCAAGGATATGAAGAACATAAAAAATAACCGTGGCTTTGCTTTCATCGACTATTATAATAATGCATGTGCTGAATATTCAAGGCAAAAGATGATGAGCCCGTCATTTAAGCTAGGTGATAATGCTCCAACAGTGAGCTGGGCTGACCCTAAAAATGCTGATTCCTCTGCTTCATCTCAGGTGAAAGCAGTATATGTGAAGAACTTACCTAAGAATGTAACTCAAGAACAGTTGAAGAAGCTTTTTGAACGTCATGGGAAGATCACAAAGGTGGTTCTTCCATCCGCAAAGTCTGGGCAGGAAAAGAACAGAATCGGTTTTGTCCATTTTGCAGAGAGGTCAAATGCTATGAAAGCACTAAAAAACACTGAAAAATATGAATTAGAAGGTCAAATTTTAGAGTGCTCTCTAGCAAAGCCACAGGCTGATCAAAAGTCTGGAGGATCAAACACACAGAAGCCAGGATTGCTTCCAAGTTATCCACCACAGGTTGGTGGTTATGGTTTGCTTGGGGGTCCCTATGGTGCACTCGGTGCAGGATATGGTGCTCCAGGTCTTCCACAGCCCATGATGTATGGAACGGGTCCAACTCCTGCTGGAATGGGCATGATGCCTATGCTTCTGCCTGATGGGCGGATTGCATATGTCTTGCAACATCCAGGAATGCAGCCACAAGCACAAACCCCACCCTCACATCAGAGAAGTGGCAGGAGTGGTGGTGGCAGTAGCGGCAGCAGGAATGCCAGCAGTTCAAATAAGGGAAGGCACAACAATGATAATGGCCAAGGGCGCCGATATCGTCCATATTAG 1464 0.4413 MPRENANSSPVAKPSEPEKPAESDERVNFTDANDSDEEIEYEEIEVEEEVEEEEEEDPEEIEEEEEEEEVEEEEEVEEVEEDDAKVEDENEKKKHAELLSLPPHGSEVYIGGIPLDVSDEDLKAFCEHIGEVAEVRIMKGKDASENKGFCFVTFRSVELASKAIEELNNKEFKGKKIKCSTAQAKHRLFIGNVPRSWDEEDLRKVVSEIGPGVTSIELVKDMKNIKNNRGFAFIDYYNNACAEYSRQKMMSPSFKLGDNAPTVSWADPKNADSSASSQVKAVYVKNLPKNVTQEQLKKLFERHGKITKVVLPSAKSGQEKNRIGFVHFAERSNAMKALKNTEKYELEGQILECSLAKPQADQKSGGSNTQKPGLLPSYPPQVGGYGLLGGPYGALGAGYGAPGLPQPMMYGTGPTPAGMGMMPMLLPDGRIAYVLQHPGMQPQAQTPPSHQRSGRSGGGSSGSRNASSSNKGRHNNDNGQGRRYRPY* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1594 487 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 186 268 IPR000504 GO:0003723
Lan8g1594 487 SMART rrm1_1 281 354 IPR000504 GO:0003723
Lan8g1594 487 SMART rrm1_1 187 264 IPR000504 GO:0003723
Lan8g1594 487 SMART rrm1_1 107 180 IPR000504 GO:0003723
Lan8g1594 487 Gene3D - 187 267 IPR012677 -
Lan8g1594 487 MobiDBLite consensus disorder prediction 440 487 - -
Lan8g1594 487 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 1 460 - -
Lan8g1594 487 PANTHER RNA RECOGNITION MOTIF 1 460 - -
Lan8g1594 487 SUPERFAMILY RNA-binding domain, RBD 103 272 IPR035979 GO:0003676
Lan8g1594 487 MobiDBLite consensus disorder prediction 357 377 - -
Lan8g1594 487 Gene3D - 28 186 IPR012677 -
Lan8g1594 487 Gene3D - 268 386 IPR012677 -
Lan8g1594 487 SUPERFAMILY RNA-binding domain, RBD 273 385 IPR035979 GO:0003676
Lan8g1594 487 MobiDBLite consensus disorder prediction 1 92 - -
Lan8g1594 487 SMART rrm2_1 281 354 IPR003954 GO:0003676
Lan8g1594 487 SMART rrm2_1 107 180 IPR003954 GO:0003676
Lan8g1594 487 MobiDBLite consensus disorder prediction 360 375 - -
Lan8g1594 487 MobiDBLite consensus disorder prediction 440 475 - -
Lan8g1594 487 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 178 IPR000504 GO:0003723
Lan8g1594 487 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 282 349 IPR000504 GO:0003723
Lan8g1594 487 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 188 249 IPR000504 GO:0003723
Lan8g1594 487 Coils Coil 36 96 - -
Lan8g1594 487 CDD RRM_SF 108 180 - -
Lan8g1594 487 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 280 358 IPR000504 GO:0003723
Lan8g1594 487 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 184 IPR000504 GO:0003723
Lan8g1594 487 MobiDBLite consensus disorder prediction 17 33 - -
Lan8g1594 487 MobiDBLite consensus disorder prediction 34 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1594 Lan-Chr8 22931625 22937077 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1594 108 450 Eukaryotic Initiation Factors Gene Family AT4G34110 24.267 7.37e-13 68.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g1594 8 22931625 22937077 Lan13g0434 13 3142333 3148191 LSH