Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1580 ATGTCAGGCACGACGCCACCACCCTCCGCCGCTGCTAACCCGCCGGAGCAGATTAAACTGACGATGAAACGGCAACTTCCGTTTTCATCGATGAAACCGCCGTTTGTCTCTGCCGGAGATTATCATCGCTTTGCTCCTGAACGACGCCGAAATGCTGACCAACCAGCCGAAGCCATAGTTGTCAAGTCTCCACAATTGAAGCGGAAGAACGAAGTGACTGATTTTGAAACTGATTCTTGTGATAGGATGAATCCTGGATCCACTGAAGCACCTAATAGTCCTTTTCAGACACCTGTATCAGGAAAGATGGAGAAGGGTGGCAAATCCTCTAGGTTTACAAAATCCAGTAGACCTGGACCTCAAACTCCAGGATCAAATATTGGTTCTCCTTCAGGAAATAATCTCACACCTGCTGGTCCATGTCGTTATGACAGCTCTTTAGGTCTGTTGACAAAGAAATTCATCAATTTGATCAGACAAGCAGAGGATGGTATTCTTGATCTAAATAATGCTGCCGACACATTAGAGGTGCAAAAGAGGAGGATATATGATATAACAAATGTTCTCGAAGGGATTGGCCTTATAGAAAAGAAGCTCAAGAACAGAATTCAGTGGAAAGGTCTGGATGTCTCAAGACCAGGGGAGGCTGAAGATAGTTTTAGTAGTTTACAGGCAGAAGTTGAAAATCTTACAATGGAGGAGCATCAGTTAGATGAGCAGATAAGGGAGATGCAAGAAAGACTACGAGAACTTAGTGAAGATGAAAACAACGAGAGGTTGCTTTTTGTCACCGAGGAAGATATAAAGAATTTGCCCTGCTTCCAGAATGAAACCTTGATAGCAATTAAGGCTCCACATGGCACCACTTTGGAGGTCCCTGACCCTGATGAGGCTGTTGATTATCCCCAGAGGAGATACAGGATAGTCCTGAGAAGCACAATGGGTCCGATAGATGTTTACCTAGTTAGTCAATTTGAAGAGAAGTTTGAACAGATAAATGGTGTTGATGCTGCACCAAATATTCCATCCAGTCCAGAATTTAACAAGCAACAATCATCAGTGGTCTCAGAGGATAGAGGGAAGGGCATAGCAGAGGGTAGAGGTAAAGAAATAGAAGTGCAGGGACAAGATGGCCATGGGCCTAGTTCAGATTTTACTAGCGCACAGGACTTTGTGAGCGGGATAATGAAGATTGTTCCTTCAGATGTTGATAGTGATGCTGATTACTGGCTTTTATCAGATGCCGATGTTAGCATAACAGACATGTGGAGAACAGAATCTGGAGTTGAGTGGAACGAACTGGATAGAACACTTCAACAGGATAATCTTGTAACTCATGATCTCACTGCCACCCCAACTAATCCTCCAAATGTAAGTGAAACCCCTTCTACATCTAACCCTACTGGACTTGAAGCTTCAAAAGGATTCTAG 1431 0.4389 MSGTTPPPSAAANPPEQIKLTMKRQLPFSSMKPPFVSAGDYHRFAPERRRNADQPAEAIVVKSPQLKRKNEVTDFETDSCDRMNPGSTEAPNSPFQTPVSGKMEKGGKSSRFTKSSRPGPQTPGSNIGSPSGNNLTPAGPCRYDSSLGLLTKKFINLIRQAEDGILDLNNAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGEAEDSFSSLQAEVENLTMEEHQLDEQIREMQERLRELSEDENNERLLFVTEEDIKNLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEQINGVDAAPNIPSSPEFNKQQSSVVSEDRGKGIAEGRGKEIEVQGQDGHGPSSDFTSAQDFVSGIMKIVPSDVDSDADYWLLSDADVSITDMWRTESGVEWNELDRTLQQDNLVTHDLTATPTNPPNVSETPSTSNPTGLEASKGF* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1580 476 Coils Coil 220 261 - -
Lan8g1580 476 MobiDBLite consensus disorder prediction 447 476 - -
Lan8g1580 476 SUPERFAMILY "Winged helix" DNA-binding domain 142 205 IPR036390 -
Lan8g1580 476 Coils Coil 158 178 - -
Lan8g1580 476 MobiDBLite consensus disorder prediction 1 139 - -
Lan8g1580 476 MobiDBLite consensus disorder prediction 343 357 - -
Lan8g1580 476 Pfam E2F transcription factor CC-MB domain 223 323 IPR032198 GO:0046983
Lan8g1580 476 SUPERFAMILY E2F-DP heterodimerization region 220 324 IPR037241 -
Lan8g1580 476 Gene3D - 214 324 - -
Lan8g1580 476 MobiDBLite consensus disorder prediction 80 99 - -
Lan8g1580 476 PANTHER TRANSCRIPTION FACTOR E2FB 19 461 - -
Lan8g1580 476 MobiDBLite consensus disorder prediction 112 139 - -
Lan8g1580 476 PANTHER TRANSCRIPTION FACTOR E2F 19 461 IPR015633 GO:0000978|GO:0006357
Lan8g1580 476 MobiDBLite consensus disorder prediction 360 374 - -
Lan8g1580 476 MobiDBLite consensus disorder prediction 336 387 - -
Lan8g1580 476 SMART E2F_TDP_2 142 207 IPR003316 GO:0005667|GO:0006355
Lan8g1580 476 Gene3D - 136 209 IPR036388 -
Lan8g1580 476 Pfam E2F/DP family winged-helix DNA-binding domain 144 207 IPR003316 GO:0005667|GO:0006355
Lan8g1580 476 CDD E2F_DD 218 324 IPR032198 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1580 Lan-Chr8 22856890 22863691 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1580 23 469 E2F-DP Transcription Factor Family AT5G22220 57.051 4.03e-157 452
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Lan8g1580 E2F_CC-MB 5.3e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1580 K06620 - gmx:100819817 734.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0390 7 2644183 2648695 Lan8g1580 8 22856890 22863691 LSH
Lan8g1580 8 22856890 22863691 Lan13g0444 13 3218227 3222901 LSH