Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1576 ATGGCAGAAACTGAAATTCCTCAATATTTTGTTTGTCCCATTTCTCTTCAGATCATGAAGGACCCTGTGACTGCAGTTACAGGCATAACATATGACAGAGAAAGCATCGAGCAGTGGTTGCTCAAGTCCAAATATTGCATGTGCCCAGTTTCCAAACAACCACTGCCAAGAAGCTCAGAGTTCTTAATTCCCAACAACACTTTATTCAGACTAATCAATGCATGGTGCTCAGCAAATGAAGCCAAAGCTATAGATCAAATTCAAAAGTTGAAAACCCCTCTTGATAAGGTCTATGTTCAGAAACTTGTGAGGGATCTTGAGGTTCCTCATTTGTATCAAACAACATTGGAGGAGATGCATGCTTTGGCCATAGAGAGCGAGATGAAGAGAACGTGCATGGTTGAGGAAGGAGTTACCCAGGCTATGATTATGGTGATTAACAAGAGTTTCAAAGAAGGTAAAACAACATGCCTGGAAGAAGCTATTGGAATTCTTCGTCTTCTTTGGAATGTTCCAACCATGATCAACAACATGAAGCCTCTTGTTGGAGAAAACATGGACTTCGTCAACTCTTTGACTTGGACGTTGAAACTTCAAGTACATAATAATGTAAAGATGGTAAACGAAGCAATGCTTCTATTGAAGTCCACCATGGAAGTCGCAGATTCAACAGGAAGTTTAAACATTGAATTCTTCAGAGAAATGGTTTCAGTACTAAGAAATAATAAATCACTCTCTCAACAAGCCATAAAATCTGCTTTGCATGTCCTTATACAAACGTGCCCTCTGGGTATAAACAGAACAAGGATCGTGGAAGCTGGTGCAGTCAAAGAACTCATCGAGCTTGAGCTAGAAAAACCGGAAAAGAGCATAACAGAACTCATATTTAACCTTCTAGCACATCTTTGTTCACGTCCTGATGGAAGAAAACAGTTTTTGCTTCATGCAGCGAGTATAGCAATGATTTCTAAGAGGATTTTGAGCGTTTCTCCAGCAACAGATGATAGAGCAATTCATATATTTGCATTGATTGCAAAGTATCCAGGATCAAATGAAGTCATTTTAGAGATGTTGAGGGTTGGAGCCGTATCAAAACTTTGCATGGTGATGCAAGCAGCTTGTGCTTCATATTTGAAAGAAAAAGCAAGAGATATCCTTAGGTTACACTCCAAAGTTTGGAACAATTCTCCTTGCATATTGTGTATTTGCTAA 1212 0.3927 MAETEIPQYFVCPISLQIMKDPVTAVTGITYDRESIEQWLLKSKYCMCPVSKQPLPRSSEFLIPNNTLFRLINAWCSANEAKAIDQIQKLKTPLDKVYVQKLVRDLEVPHLYQTTLEEMHALAIESEMKRTCMVEEGVTQAMIMVINKSFKEGKTTCLEEAIGILRLLWNVPTMINNMKPLVGENMDFVNSLTWTLKLQVHNNVKMVNEAMLLLKSTMEVADSTGSLNIEFFREMVSVLRNNKSLSQQAIKSALHVLIQTCPLGINRTRIVEAGAVKELIELELEKPEKSITELIFNLLAHLCSRPDGRKQFLLHAASIAMISKRILSVSPATDDRAIHIFALIAKYPGSNEVILEMLRVGAVSKLCMVMQAACASYLKEKARDILRLHSKVWNNSPCILCIC* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1576 403 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB24 3 399 - -
Lan8g1576 403 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 92 IPR013083 -
Lan8g1576 403 ProSiteProfiles U-box domain profile. 5 82 IPR003613 GO:0004842|GO:0016567
Lan8g1576 403 Pfam U-box domain 6 80 IPR003613 GO:0004842|GO:0016567
Lan8g1576 403 SMART Ubox_2 9 75 IPR003613 GO:0004842|GO:0016567
Lan8g1576 403 SUPERFAMILY ARM repeat 121 370 IPR016024 -
Lan8g1576 403 SUPERFAMILY RING/U-box 3 84 - -
Lan8g1576 403 CDD RING-Ubox_PUB 10 53 IPR045210 -
Lan8g1576 403 Gene3D - 99 393 IPR011989 -
Lan8g1576 403 PANTHER WDSAM1 PROTEIN 3 399 IPR045185 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1576 Lan-Chr8 22788628 22790291 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1576 3 399 U-box Gene Family AT2G35930 36.725 3.17e-85 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1576 - - lang:109351746 608.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g1862 6 29754332 29755648 Lan8g1576 8 22788628 22790291 PCT
Lan3g0013 3 160135 161665 Lan8g1576 8 22788628 22790291 PCT
Lan8g1576 8 22788628 22790291 Lan6g1862 6 29754332 29755648 PCT
Lan8g1576 8 22788628 22790291 Lan3g0013 3 160135 161665 PCT