Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1570 ATGTTTGGGAGAGCACCGAAGAAGAGCGATAACAGTAGATACTATGAAATTCTTGGCGTTGCTAAAAGTGCTTCTCAGGATGATCTCAAAAAAGCTTACAAGAAAGCCGCTATTAAGAATCACCCCGATAAGGGTGGTGATCCTGAAAAGTTCAAAGAGCTGGCCCAAGCTTATGAGGTTCTAAGTGACCCTGAGAAGCGTGAGATTTATGATCAATATGGTGAAGATGCTCTTAAGGAAGGAATGGGTGGCGGTGGCGGTGGACATGACCCCTTTGACATCTTCAGTTCATTCTTCGGTGGAGGTGGAAATCCATTTGGTGGCGGTAGCAGCCGAGGACGGAGGCAGCGACGTGGAGAAGATGTTGTTCACCCTCTCAAGGTCAGCTTGGAGGACCTTTACAGTGGGACATCTAAGAAGCTCTCCCTCTCTAGAAATGTCATATGCTCAAAGTGCAGTGGGAAAGGGTCTAAGTCTGGTGCTTCCACAAAGTGTGCTGGTTGTCAAGGAACTGGTATGAAGGTTTCTATCAGACACCTTGGTCCTTCCATGATTCAGCAAATGCAACATGCTTGCAATGAATGTAAGGGTACTGGAGAAACCATCAATGACAGGGACCGCTGCCCTCAGTGCAAGGGAGAAAAGGTTGTTCAAGAGAAGAAAGTACTTGAAGTTATTGTGGAGAAGGGGATGCAGAATGGCCAGAAGATTACATTCCCTGGTGAAGCCGATGAAGCGCCAGACACAGTTACTGGGGATATTGTCTTTGTGCTTCAGCAGAAGGAACATCCCAAGTTCAAGAGAAAGGCCGAAGATCTCATTGTGGAGCACACTTTGTCCCTCACCGATGCTTTGTGTGGCTTCCAATTTGTGCTGTCTCACTTGGATGGCCGTCAGCTCCTTATCAAATCCAACCCTGGTGAAGTTATTAAGCCTGATTCATACAAGGCAATTAACGATGAAGGAATGCCATTGTATCAGAGGCCATTCATGAAAGGGAAGCTTTACATTCACTTCAACGTGGAGTTCCCTGAATCTCTAAGTCTCGATCAGGTTAAGGCTTTAGAGGCTGTCCTGCCACCAAAGCCTTCATCACAATTAACAGACATGGAGCTAGATGAATGTGAGGAGACCACACTCAATGACGTGAACATGGAAGAGGAGTCAAGGAGGAAGCAGCAACAAGCTCAGCAGGAAGCATATGATGAGGATGATGATATGCCTGGTGGTGCACAGAGGGTACAGTGTGCCCAGCAGTAG 1260 0.4706 MFGRAPKKSDNSRYYEILGVAKSASQDDLKKAYKKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGGGGHDPFDIFSSFFGGGGNPFGGGSSRGRRQRRGEDVVHPLKVSLEDLYSGTSKKLSLSRNVICSKCSGKGSKSGASTKCAGCQGTGMKVSIRHLGPSMIQQMQHACNECKGTGETINDRDRCPQCKGEKVVQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKAEDLIVEHTLSLTDALCGFQFVLSHLDGRQLLIKSNPGEVIKPDSYKAINDEGMPLYQRPFMKGKLYIHFNVEFPESLSLDQVKALEAVLPPKPSSQLTDMELDECEETTLNDVNMEEESRRKQQQAQQEAYDEDDDMPGGAQRVQCAQQ* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1570 419 Hamap Chaperone protein DnaJ [dnaJ]. 10 383 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Lan8g1570 419 Pfam DnaJ C terminal domain 123 344 IPR002939 -
Lan8g1570 419 CDD DnaJ_zf 149 215 IPR001305 GO:0031072|GO:0051082
Lan8g1570 419 ProSitePatterns Nt-dnaJ domain signature. 51 70 IPR018253 -
Lan8g1570 419 CDD DnaJ 14 63 IPR001623 -
Lan8g1570 419 ProSiteProfiles Zinc finger CR-type profile. 136 220 IPR001305 GO:0031072|GO:0051082
Lan8g1570 419 SMART dnaj_3 12 66 IPR001623 -
Lan8g1570 419 Gene3D - 110 261 - -
Lan8g1570 419 Gene3D - 263 345 - -
Lan8g1570 419 PANTHER DNAJ-LIKE-2, ISOFORM A-RELATED 7 419 IPR044713 GO:0006457|GO:0030544
Lan8g1570 419 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 146 218 IPR036410 -
Lan8g1570 419 MobiDBLite consensus disorder prediction 378 419 - -
Lan8g1570 419 Pfam DnaJ central domain 149 215 IPR001305 GO:0031072|GO:0051082
Lan8g1570 419 Pfam DnaJ domain 14 71 IPR001623 -
Lan8g1570 419 SUPERFAMILY Chaperone J-domain 9 111 IPR036869 -
Lan8g1570 419 ProSiteProfiles dnaJ domain profile. 13 74 IPR001623 -
Lan8g1570 419 CDD DnaJ_C 120 347 - -
Lan8g1570 419 PANTHER CHAPERONE PROTEIN DNAJ 2-RELATED 7 419 - -
Lan8g1570 419 MobiDBLite consensus disorder prediction 383 399 - -
Lan8g1570 419 Gene3D - 149 215 - -
Lan8g1570 419 SUPERFAMILY HSP40/DnaJ peptide-binding domain 115 272 IPR008971 GO:0006457|GO:0051082
Lan8g1570 419 Gene3D DnaJ domain 10 109 IPR036869 -
Lan8g1570 419 PRINTS DnaJ domain signature 15 33 IPR001623 -
Lan8g1570 419 PRINTS DnaJ domain signature 46 66 IPR001623 -
Lan8g1570 419 PRINTS DnaJ domain signature 66 85 IPR001623 -
Lan8g1570 419 SUPERFAMILY HSP40/DnaJ peptide-binding domain 266 355 IPR008971 GO:0006457|GO:0051082
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1570 Lan-Chr8 22721181 22726910 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1570 14 73 C2H2 Transcription Factor Family AT1G74250 42.029 1.84e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1570 K09503 - gmx:547558 698.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0404 7 2800997 2817051 Lan8g1570 8 22721181 22726910 LSH
Lan8g1570 8 22721181 22726910 Lan13g0525 13 3959392 3961704 LSH
Lan10g0018 10 99270 101442 Lan8g1570 8 22721181 22726910 PCT
Lan8g1570 8 22721181 22726910 Lan10g0018 10 99270 101442 PCT