Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1565 ATGTCAATGGACATGATGGCAACTGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTCTAGCGGTAAGTGTTCCACATAGCAGTTTGCTAACCATAGTGACGGTTAGATGTGGGCATTGTTCCAATTTGCTATCAGTTAACATGGGAGCATCACTTCAACCATTTCCTCTTCCCCAAGACCCTCATCAGTCACAGAAACAGCACCTAAGCATTGATGAGTCAAGCAGCAAGGAACTGGGATCATCTTCAAAATGTAACAAAATAATGGCATTTGAACCTGTAGAGCATGAACAACCTAGGATTTCTCCCATTCCTCCCCCTGAAAAGAGACAACGTGTTCCTTCTGCTTATAATCGGTTCATCAAGGAAGAAATCCAAAGGATTAAGGCTAGTAATCCAGATATCAGCCACAGGGAGGCTTTCAGCACAGCAGCCAAAAACTGGGCACATTTCCCTCATATTCACTTTGGATTAAAGCAGCTGGATGGTAAGAACAAGCAAGCAAAGTTGGACCATGGAAGTGAAGCAGCTCAAAAGTCTAATGAATTCTACTGA 564 0.4291 MSMDMMATERVCYVHCNFCNTILAVSVPHSSLLTIVTVRCGHCSNLLSVNMGASLQPFPLPQDPHQSQKQHLSIDESSSKELGSSSKCNKIMAFEPVEHEQPRISPIPPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKQLDGKNKQAKLDHGSEAAQKSNEFY* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1565 187 MobiDBLite consensus disorder prediction 167 187 - -
Lan8g1565 187 Gene3D High mobility group box domain 99 184 IPR036910 -
Lan8g1565 187 PANTHER PLANT-SPECIFIC TRANSCRIPTION FACTOR YABBY FAMILY PROTEIN 1 187 - -
Lan8g1565 187 MobiDBLite consensus disorder prediction 58 85 - -
Lan8g1565 187 SUPERFAMILY HMG-box 103 154 IPR036910 -
Lan8g1565 187 Pfam YABBY protein 7 161 IPR006780 GO:0007275
Lan8g1565 187 PANTHER PROTEIN YABBY 6-RELATED 1 187 IPR006780 GO:0007275
Lan8g1565 187 MobiDBLite consensus disorder prediction 60 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1565 Lan-Chr8 22686728 22693299 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1565 1 187 C2C2-YABBY Transcription Factor Family AT1G08465 63.684 6.67e-77 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Lan8g1565 YABBY 4.1e-71 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1565 K25796 - gmx:100500091 295.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0406 7 2843342 2848181 Lan8g1565 8 22686728 22693299 LSH
Lan10g0020 10 105432 110846 Lan8g1565 8 22686728 22693299 PCT
Lan3g0015 3 173284 177380 Lan8g1565 8 22686728 22693299 PCT
Lan8g1565 8 22686728 22693299 Lan10g0020 10 105432 110846 PCT
Lan8g1565 8 22686728 22693299 Lan3g0015 3 173284 177380 PCT