Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1556 ATGAAGTGGACTAGAGGTCACACCATAGGCCGTGGCTCAACGGCCACCGTCTCCACCGCCGCCACCTCTATCGACATCTTTGCTGTCAAGTCAACAAAACTATTTAGTTCGGAGCCTTTGCAGAGAGAACAAAAAATTCTATCTTCTCTATGCTCACCGTATATAGTTACTTTTAAAGGGTGTGATATTACAATGGAGAACAACATGCTTATGTACAATCTATTCATGGAGTACATGCCATTTGGCACGCTTATTAAGGCAACTCAACGGCACGGTGGCCGGCTCAATGAGCCATTGCTTGCTTGCTACACAAGGCAAGTTCTACAAGGGATAGAGTATTTGCATTCAAAAGGGTTGGTGCATTGTGACATCAAGGGTGCCAATATCTTGATTAGTGAAGATGGGGTGGCCAAAGTTGGTGACTTTGGATGCGCTAAAAGTGTCAATGATGATGCCAAAGCCATGTCAATCAGTGGTACGCCGATGTTTATGGCACCGGAGGTGGCGCGTGGCGAAGAACAAGGCTATCCTAGTGATATTTGGTCACTTGGGTGTACTATGATTGAAATGGCTATTGGTGATTCACCATGGCCTAATGTGGCAGACCCTTTTTCAGTGCTTTACCATATTGCATATTCCAATGAGGTGCCTGAGATTCCAAGTTTTCTATCTGAGGAAGCAAAGCATTTCATAGGGAAGTGTCTTAGAAGGAATCCACAAGAGAGGTGGACAGCTAGTCAACTCTTGAAACACCCATTTCTTGTTGAATTCAATTCCAATGCAAAGCAAATTGAGGAACATAATTCAAGTTCCCCAACAAGTGTTCTTGAGCAAGGCTTTTGGAATTGTGTGGAGGAACCAGGATGTGTTGGCAATTTGATTCACATGACATGTTTTGAGAATTCCCCTGCTGCTAGGGTCAGAAGTTTAGCTATGTGTTCAGGGGAGCCCTGTTTGGCATGGCATGATGATGAAAATTGGATAACAACCAGAGGGAATGAGACTATGGATGAAGTTCAAGCATTTGAAAATTGTGGGTCAGAGACAGCATCATCATCTAGTGATGTTTTGGCTCTTGATGAGTTGGTAAAAAGCAATGTCAGTGGTAGAATTAGTGGTCAATTTTGTAAGGGTCACAAATGTAGGGATGGTAGTAGTGTTGTTGTTAGTAATCTCAATTTTGAGAGAGGCGTTGATAAGATGCTACCACTCACTTCAACATTGGATATTTTATAA 1236 0.4288 MKWTRGHTIGRGSTATVSTAATSIDIFAVKSTKLFSSEPLQREQKILSSLCSPYIVTFKGCDITMENNMLMYNLFMEYMPFGTLIKATQRHGGRLNEPLLACYTRQVLQGIEYLHSKGLVHCDIKGANILISEDGVAKVGDFGCAKSVNDDAKAMSISGTPMFMAPEVARGEEQGYPSDIWSLGCTMIEMAIGDSPWPNVADPFSVLYHIAYSNEVPEIPSFLSEEAKHFIGKCLRRNPQERWTASQLLKHPFLVEFNSNAKQIEEHNSSSPTSVLEQGFWNCVEEPGCVGNLIHMTCFENSPAARVRSLAMCSGEPCLAWHDDENWITTRGNETMDEVQAFENCGSETASSSSDVLALDELVKSNVSGRISGQFCKGHKCRDGSSVVVSNLNFERGVDKMLPLTSTLDIL* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1556 411 Pfam Protein kinase domain 4 254 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan8g1556 411 PANTHER MAP KINASE KINASE KINASE 1 345 - -
Lan8g1556 411 SMART serkin_6 3 254 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan8g1556 411 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 345 - -
Lan8g1556 411 Gene3D Transferase(Phosphotransferase) domain 1 1 286 - -
Lan8g1556 411 ProSiteProfiles Protein kinase domain profile. 3 254 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan8g1556 411 ProSitePatterns Protein kinases ATP-binding region signature. 9 30 IPR017441 GO:0005524
Lan8g1556 411 CDD STKc_MAPKKK 2 254 - -
Lan8g1556 411 ProSitePatterns Serine/Threonine protein kinases active-site signature. 119 131 IPR008271 GO:0004672|GO:0006468
Lan8g1556 411 SUPERFAMILY Protein kinase-like (PK-like) 3 274 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1556 Lan-Chr8 22590667 22591995 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1556 1 284 MAP Kinase Kinase Kinase AT2G32510 54.983 4.89e-109 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Lan8g1556 Pkinase 3.6e-58 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g1556 8 22590667 22591995 Lan8g1556 8 22590667 22591995 ECH
Lan8g1556 8 22590667 22591995 Lan16g0379 16 3725804 3727025 ECH
Lan7g0417 7 2931947 2933125 Lan8g1556 8 22590667 22591995 LSH
Lan10g0027 10 140051 141552 Lan8g1556 8 22590667 22591995 PCT
Lan8g1556 8 22590667 22591995 Lan10g0027 10 140051 141552 PCT