Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1539 ATGGTTAAGGGCAGAACATTATTGCTCTTGGTTTTTGGCTTGTGGATTTCCACTGTGAATTCTACTGTGTCTTCAAGACCGAAGGTTGTGAAAATTGGAGCCCTTCTTACTTATAATTCTGTCATTGGAAGATCGGCTAGACCCGCAATTATGGCTGCCATTAAGGATGTTAATTCTAATATGAATGTTCTCCCTGGCATTGAACTTCAAGTTATTTTACATGATACAAATTGCAGTGGTTTCCTTGGCACAGTGGAAGCCCTGCAGTTGATGAAGAATGAAGTGATTGCTGCTATTGGTCCACAATCTTCCGGAATAGCTCATGTCGTTTCACATGTGGCTAATGAACTGCATGTACCTTTTCTATCATTTGGGGCAACTGACCCAACTCTATCTGCTCTACAATACCCCTATTTCATCAGGACTACCCAGAGTGACTATTACCAGATGCACGCAATTGCAGATTTTATTGAGTATCACGGGTGGAGGAAGGTCATTGCCATATTTGTAGATGATGATAATGGAAGAAATGGAGTTACTGCATTAGGTGATGCGCTGTCAAAGAAACGCGCCAAGATCTCTTACAAGGCTGCATTCCCTCCTGAAGCCTCACAAAGTGATATCAGTGACTTGTTAAATGAAGTAAACTTAATGGAATCAAGGGTCTATGTTCTACATGTTAATCCTGATTCTGGTTTGACAATCTTTTCCATTGCGAAGAAGCTACAAATGATGAGCGCTGGCTATGTTTGGATTGCAACAGATTGGCTTCCTTCAATGCTGGATTCATTAGTTCGAGCTGATACAGGCACAATGAATATTTTACAAGGGGTTGTGGCTTTTCGTCATCACATTCCTGATACTGATCTCAAGAAGAGTTTTATCACTAGGCTGAAAAACCTTAAAGACAACGACACTGAAAGTTTCAATTCTTATGCATTTTATGCATATGATTCTGTTTGGTTAGCAGCTCATGCCCTTGATGTTTTTCTCAATGAAGGTGGGAATATATCTTTCTCCAGTGACCCCAGGTTGCGTGACACGAAAGGAAGTGTGCTGAATTTAGCAGCACTTAGCACCTTTGATGGGGGTGATCAGTTTCTCCAGACAATTTTGCGAATGAACTTTACTGGTTTGAGTGGTAAAATTGAGTTTGACCATGATAAGAATTTAATTTATCCAGCATATGATATTCTAAATATTGGTGGAATTGGATCGCGTAGTATCGGTTATTGGTCTAATGAGTCTGGTCTGTCAGTATCAGTTCCTGAAACTTTATACATGAAAAAATCATCCAACACTTCAACAAGCAATCAAAACCTGTACAGTGTGATATGGCCTGGAGATGTCACAACTACACCTAAGGGATGGATATTCCCTAACAATGGTAAGCCACTGCGAATAGCAGTGCCAAACCGAGTAAGTTATAAGGAGTTTGTTGCTGAAGACAAGAACCCTCCAGGGGTACAAGGCTTTTGCATCGATGTCTTTGAAGCAGCCTTAAAGCTGTTGCCTTATCCTGTCCCCCGACAATATATGCTATATGGAAATGGCGATAGGAATCCTAACTACAACAACCTTGTGGATCAGGTTGCACAAAATAACTATGATGCAGCCGTTGGAGATGTTACAATTGTGACAAACAGGACACGGTTTGTGGATTTTACTCAACCTTTCATGGGATCAGGGCTTGTTATTGTTGTTCCTGTCAAAGAGGACAAGTCAAGCCCTTGGGCTTTCCTTAAGCCATTCACTGCTCAAATGTGGTGTATCACTGGTGCTTTCTCTCTTTTTGTGGGAACTGTTGTGTGGATTCTTGAGCACCGATTGAATGAAGAGTTCCGTGGTTCACCAAGGACACAACTTATAACAGTCTTTTGCTTTAGTCTCTCAACAATGATTTTCTCACACAGAGAGAACACTGTGAGTACTCTTGGAAGATTAGTGCTAATCATGTGGCTTTTTGTGGTGTTAATTATCAATTCAAGCTACACAGCTAGCTTGACATCCATCCTCACAGTGCAGCAACTATCATCACAAATTGAAGGAATAGACAGCTTGATCTCAAGTACTCAACCTATTGGAATTCAAGACGGGTCATTCGCACGCAAGTATCTAGTAGAGGAACTCCATATACCAGAATCAAGGATAGTAACTTTGAAAAACATGCAAGGTTATATTGATGCCCTCCAGCGTGGACCGAAATATGGAGGGGTTGCGGCCGTGGTTGATGAGCTTCCTTATATTGAGACCTTGATGTCCAGCACTGACTGTAAGTTCAGAACTGTCGGGCAGGAGTTCACTAAAAGTGGCTGGGGATTTGCATTCCAAAGGGACTCTCCCCTTGCTATTGATTTGTCAACTGCCATTCTTCAACTCTCAGAGAATGGTGATCTTCAAAGGATACATGACAAATGGCTTAAAAAAATGGAGTGTTCCAATGATGTTGATCCAAACAAACTATCTTTGAGAAGCTTCTGGGTCCTCTTTCTTATATGTGCCATTGTATCTGTCCTTGCTATAATTATATTCTTTGTTAGAGTGTTGTGCCAATATATCAAGTTCAGTCCAGAGCCTGAGGAGGTTGGTGTTGAAATTCAACCAACCAAGTATAGAAGAACATCCAAGACTCATAGCTTCAAGGACTTGATTGTTTTTGTAGATAAAAAGGAAGCAGAAATTAAAGAGATACTTAGGGAGAAGAGGAAGAAAAGGAGACGTAGCAAAAGCTTGGATGGGTTATCAAATTCAACCACCTGA 2760 0.4098 MVKGRTLLLLVFGLWISTVNSTVSSRPKVVKIGALLTYNSVIGRSARPAIMAAIKDVNSNMNVLPGIELQVILHDTNCSGFLGTVEALQLMKNEVIAAIGPQSSGIAHVVSHVANELHVPFLSFGATDPTLSALQYPYFIRTTQSDYYQMHAIADFIEYHGWRKVIAIFVDDDNGRNGVTALGDALSKKRAKISYKAAFPPEASQSDISDLLNEVNLMESRVYVLHVNPDSGLTIFSIAKKLQMMSAGYVWIATDWLPSMLDSLVRADTGTMNILQGVVAFRHHIPDTDLKKSFITRLKNLKDNDTESFNSYAFYAYDSVWLAAHALDVFLNEGGNISFSSDPRLRDTKGSVLNLAALSTFDGGDQFLQTILRMNFTGLSGKIEFDHDKNLIYPAYDILNIGGIGSRSIGYWSNESGLSVSVPETLYMKKSSNTSTSNQNLYSVIWPGDVTTTPKGWIFPNNGKPLRIAVPNRVSYKEFVAEDKNPPGVQGFCIDVFEAALKLLPYPVPRQYMLYGNGDRNPNYNNLVDQVAQNNYDAAVGDVTIVTNRTRFVDFTQPFMGSGLVIVVPVKEDKSSPWAFLKPFTAQMWCITGAFSLFVGTVVWILEHRLNEEFRGSPRTQLITVFCFSLSTMIFSHRENTVSTLGRLVLIMWLFVVLIINSSYTASLTSILTVQQLSSQIEGIDSLISSTQPIGIQDGSFARKYLVEELHIPESRIVTLKNMQGYIDALQRGPKYGGVAAVVDELPYIETLMSSTDCKFRTVGQEFTKSGWGFAFQRDSPLAIDLSTAILQLSENGDLQRIHDKWLKKMECSNDVDPNKLSLRSFWVLFLICAIVSVLAIIIFFVRVLCQYIKFSPEPEEVGVEIQPTKYRRTSKTHSFKDLIVFVDKKEAEIKEILREKRKKRRRSKSLDGLSNSTT* 920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1539 919 Gene3D - 49 393 - -
Lan8g1539 919 Gene3D - 459 576 - -
Lan8g1539 919 PANTHER GLUTAMATE RECEPTOR 3.4 18 900 - -
Lan8g1539 919 SMART GluR_14 467 809 IPR001320 GO:0015276|GO:0016020
Lan8g1539 919 CDD GluR_Plant 464 807 - -
Lan8g1539 919 SUPERFAMILY Periplasmic binding protein-like I 25 457 IPR028082 -
Lan8g1539 919 SUPERFAMILY Periplasmic binding protein-like II 442 808 - -
Lan8g1539 919 PIRSF IGluLR_plant 1 918 IPR017103 -
Lan8g1539 919 Coils Coil 887 907 - -
Lan8g1539 919 CDD PBP1_GABAb_receptor_plant 31 421 IPR044440 -
Lan8g1539 919 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 43 59 - -
Lan8g1539 919 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 103 131 - -
Lan8g1539 919 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 316 328 - -
Lan8g1539 919 Pfam Receptor family ligand binding region 47 401 IPR001828 -
Lan8g1539 919 Gene3D - 145 418 - -
Lan8g1539 919 Pfam Ligand-gated ion channel 809 835 IPR001320 GO:0015276|GO:0016020
Lan8g1539 919 Gene3D - 699 811 - -
Lan8g1539 919 Pfam Bacterial extracellular solute-binding proteins, family 3 479 808 IPR001638 -
Lan8g1539 919 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 18 900 - -
Lan8g1539 919 Gene3D - 577 698 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1539 Lan-Chr8 22458147 22464227 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1539 26 774 Ion Channels AT1G05200 67.156 0.0 1099
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1539 K05387 - gmx:100802782 1422.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g1539 8 22458147 22464227 Lan8g1539 8 22458147 22464227 ECH
Lan8g1539 8 22458147 22464227 Lan13g0506 13 3756344 3761603 LSH
Lan6g1884 6 29911747 29916113 Lan8g1539 8 22458147 22464227 PCT
Lan3g0021 3 208009 211946 Lan8g1539 8 22458147 22464227 PCT
Lan8g1539 8 22458147 22464227 Lan6g1883 6 29907748 29910396 PCT
Lan8g1539 8 22458147 22464227 Lan10g0032 10 180108 184925 PCT