Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1517 ATGGTAAGAACTCCTTCATTTGACAAAAGTGGACTGAAGAAAGGTACTTGGACTCAAGAAGAAGATAGGAAGTTAATTGCTTATGTTACTAAATATGGCAGCTGGAATTGGCGCCAACTCCCCAAGTTTGCTGGTCTGCAAAGGTGTGGGAAGAGTTGTAGACTGAGGTGGCTGAATTATCTGAGGCCTAATGTTAGAAGAGGGAATTTCACTCAAGAAGAAGAAGAGATTATAATCAGATTGCACAATAAGCTGGGCAATAGATGGTCTACCATAGCCACTCATTTATCAGGAAGAACAGATAACGAAATAAAGAACCATTGGCATACCTCACTGAAGAAGAGCTTTCAACAAAACACAGTTATAAAAGAAAAAGACAAAGCCTCCTTTAAACCTAAACATACTGAATTCAACCCAGGGAGTAGTTACTCAGTGTCTAACAATGTTGCTCTTCAAGTTACTCCTCCATCTACAACTTCCCAGATCTCAGATAGTACAACTGGCTCACTATCATCAATTTCAAGTGAATTTTCCTCTTCCATATCTTGGGATGACACTAGTAGTACCGCAAAGTTGGTGATTGAAGATGACTTCCCTTTTCTTGATGATGCATTCTGGATAGAGTCAGATCTTGCTGATATTTCCAACATTCATAGTGAAATTATTCAAGGTGACTATTACAATGATGTTTTTCAGAGTCTAGATACTATTGATATGCTGGATGCATTGTCTCCACATCCATCCTCCAACAAAAATATTGTTATGGAAAGTGACGTTGGAAGCTTTGTTTATGTTGATACAGAAGTAACAATGAATCATTTATGGACACAGTCATTTGTGTCTGACACCTGCCACGTTCCTAGCCAACTAATCACACCATTCGAAGCCGAATCTCAATATTTTTCTCAAGCTTATGGGTCTGAGTCAGACTTTTGGAGTCAGAATAATTTGTGTGATCAACATCTTAGCTTATTCTAA 978 0.3834 MVRTPSFDKSGLKKGTWTQEEDRKLIAYVTKYGSWNWRQLPKFAGLQRCGKSCRLRWLNYLRPNVRRGNFTQEEEEIIIRLHNKLGNRWSTIATHLSGRTDNEIKNHWHTSLKKSFQQNTVIKEKDKASFKPKHTEFNPGSSYSVSNNVALQVTPPSTTSQISDSTTGSLSSISSEFSSSISWDDTSSTAKLVIEDDFPFLDDAFWIESDLADISNIHSEIIQGDYYNDVFQSLDTIDMLDALSPHPSSNKNIVMESDVGSFVYVDTEVTMNHLWTQSFVSDTCHVPSQLITPFEAESQYFSQAYGSESDFWSQNNLCDQHLSLF* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1517 325 CDD SANT 69 112 IPR001005 -
Lan8g1517 325 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lan8g1517 325 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Lan8g1517 325 CDD SANT 16 61 IPR001005 -
Lan8g1517 325 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lan8g1517 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lan8g1517 325 SMART sant 66 114 IPR001005 -
Lan8g1517 325 SMART sant 13 63 IPR001005 -
Lan8g1517 325 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lan8g1517 325 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lan8g1517 325 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 244 - -
Lan8g1517 325 Gene3D - 68 137 - -
Lan8g1517 325 Gene3D - 6 66 - -
Lan8g1517 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lan8g1517 325 PANTHER MYB-RELATED TRANSCRIPTION FACTOR 1 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1517 Lan-Chr8 22208418 22210117 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1517 1 223 MYB Transcription Factor Family AT2G31180 46.018 1.60e-54 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan8g1517 Myb_DNA-binding 5.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1517 K09422 - gmx:100777107 305.449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0450 7 3287617 3289246 Lan8g1517 8 22208418 22210117 LSH