Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1516 ATGGTAAGAGCTCCTTTCTATGACAAAAGTGGAGTGAAGAAAGGTGCATGGAGTAGAGAAGAGGATGAGAGGCTAAGAGATTATGTTCAAAGATATGGTCATTCCAATTGGCGTAAACTTCCCAAGCTTGCTGGTTTAGCAAGGTGTGGGAAAAGTTGCAGACTTAGGTGGCTCAATTACTTAAAGCCTAATCTAAAACATGGGGACTACACACAAAAGGAAGAAGAAATGATCATGAAATTTCACCAAGAACTTGGAAATAAATGGTCACTAATTGCTGAAAAATTGCCAGGAAGAACTGACAATGAGATAAAGAATCACTGGCATAGTCACCTGAAAAAGTGCTTAAAGAGCAATGATATCACAACATCTGATTTGAACTCCAAGCCAGGTCATGATCCTCTTGATGGAAAAACAACTCATCAGTTTGAAAAATCTGAAAGCTTAGATGCCAATGAAGGTGCTGACTTGTATCATATTTTAGAAAGTTCATCACCTATGTCACCACAACCATGCTACATCAATGAAGCACATAACTATTCCCTTACGTCCAATGTCGCAGAATCAACCATGAACTGCAACACTTCAAAAGAAGATATCGTTGATCAATGGGTTACATTTGAGGAATTCGGCAGCGGTTTCTGGACTGAACCTTTCATAGTAGAACATACATATACTGATAATGAGATACTGTGTGATGAAGGCTTGGCCTTTTTTGTTCCACACTTCTAA 732 0.388 MVRAPFYDKSGVKKGAWSREEDERLRDYVQRYGHSNWRKLPKLAGLARCGKSCRLRWLNYLKPNLKHGDYTQKEEEMIMKFHQELGNKWSLIAEKLPGRTDNEIKNHWHSHLKKCLKSNDITTSDLNSKPGHDPLDGKTTHQFEKSESLDANEGADLYHILESSSPMSPQPCYINEAHNYSLTSNVAESTMNCNTSKEDIVDQWVTFEEFGSGFWTEPFIVEHTYTDNEILCDEGLAFFVPHF* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1516 243 SMART sant 13 63 IPR001005 -
Lan8g1516 243 SMART sant 66 114 IPR001005 -
Lan8g1516 243 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 227 - -
Lan8g1516 243 CDD SANT 16 61 IPR001005 -
Lan8g1516 243 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lan8g1516 243 CDD SANT 70 112 IPR001005 -
Lan8g1516 243 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lan8g1516 243 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Lan8g1516 243 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lan8g1516 243 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lan8g1516 243 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lan8g1516 243 PANTHER MYB TRANSCRIPTION FACTOR 1 227 - -
Lan8g1516 243 Gene3D - 69 133 - -
Lan8g1516 243 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lan8g1516 243 Gene3D - 7 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1516 Lan-Chr8 22203631 22205257 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1516 1 119 MYB Transcription Factor Family AT2G31180 63.866 3.82e-53 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan8g1516 Myb_DNA-binding 3.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1516 K09422 - gmx:100781032 247.669
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0451 7 3295938 3297403 Lan8g1516 8 22203631 22205257 LSH