Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1493 ATGCCGTTATTTCTAATGTGTGCTCTTCAGTCTATACTTCTCTACTTGATTCTACTACATTCATGCAACATTGCTGCTTACATGGATGAAGAATGGAAGAAAGCCACTGCAACATACACTAATGACACTGAGGGGTCACTTATTACAGAAGGAGCTTGTGGTTATGGAGACCTGCACAAAGCAAGTTATGGAAAATATAGTGCTGGGTTAAGCACCATTTTGTTCAGTAGAGGGAGTGCTTGTGGGGCTTGCTATGAGATTAGATGTGTTGACCACATCTTGTGGTGCATGCTTGGAAGTCCATCTGTAGTTGTTACTGCAACAGATTTCTGTCCTCCAAATTATGGGCTTTCAGAAGATTATGGTGGCTGGTGCAATTTTCCAAGAGAACATTTTGAGATGTCACAGGTTGCATTTTCTGAAATTGCAAAAAGAAAAGCTGATATAGTGCCTGTTCAGTATAAAAGAGTTAAGTGTCAAAGAAGTGGTGGTTTGAAATTCACAATGAGTGGAAGTTCTCACTTCTATCAAGTCCTGATTACCAATGTTGGGATGGATGGTGAAGTGGCTGCTGTGAAAGTGAAGGGATCAAGAACAGGATGGGTACCCATGGCAAGGAATTGGGGACAAAACTGGCATTGCAATGTTAACCTTCAACATCAGCCTTTGTCATTTGAGGTAACTAGCAACAGTGGAAGAACACTCACATCTTATAATGTAGCCCCTCCAAACTGGCAATTTGGACAGACATTTGAAGGAAAACAGTTTTAG 771 0.4112 MPLFLMCALQSILLYLILLHSCNIAAYMDEEWKKATATYTNDTEGSLITEGACGYGDLHKASYGKYSAGLSTILFSRGSACGACYEIRCVDHILWCMLGSPSVVVTATDFCPPNYGLSEDYGGWCNFPREHFEMSQVAFSEIAKRKADIVPVQYKRVKCQRSGGLKFTMSGSSHFYQVLITNVGMDGEVAAVKVKGSRTGWVPMARNWGQNWHCNVNLQHQPLSFEVTSNSGRTLTSYNVAPPNWQFGQTFEGKQF* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1493 256 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 50 164 IPR007112 -
Lan8g1493 256 SMART dpbb_1 67 154 IPR007112 -
Lan8g1493 256 Gene3D - 164 256 IPR036749 -
Lan8g1493 256 PANTHER EXPANSIN-A20 8 256 - -
Lan8g1493 256 PRINTS Expansin signature 62 76 IPR002963 GO:0009664
Lan8g1493 256 PRINTS Expansin signature 89 100 IPR002963 GO:0009664
Lan8g1493 256 PRINTS Expansin signature 103 113 IPR002963 GO:0009664
Lan8g1493 256 PRINTS Expansin signature 122 139 IPR002963 GO:0009664
Lan8g1493 256 PRINTS Expansin signature 139 152 IPR002963 GO:0009664
Lan8g1493 256 PRINTS Expansin signature 163 175 IPR002963 GO:0009664
Lan8g1493 256 PRINTS Expansin signature 175 196 IPR002963 GO:0009664
Lan8g1493 256 PRINTS Expansin signature 210 231 IPR002963 GO:0009664
Lan8g1493 256 PRINTS Expansin signature 239 255 IPR002963 GO:0009664
Lan8g1493 256 Gene3D - 18 160 IPR036908 -
Lan8g1493 256 SUPERFAMILY PHL pollen allergen 161 253 IPR036749 -
Lan8g1493 256 Pfam Expansin C-terminal domain 166 242 IPR007117 -
Lan8g1493 256 Pfam Lytic transglycolase 68 154 IPR009009 -
Lan8g1493 256 PRINTS Expansin/Lol pI family signature 31 46 IPR007118 GO:0005576
Lan8g1493 256 PRINTS Expansin/Lol pI family signature 49 67 IPR007118 GO:0005576
Lan8g1493 256 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576
Lan8g1493 256 PRINTS Expansin/Lol pI family signature 147 163 IPR007118 GO:0005576
Lan8g1493 256 PRINTS Expansin/Lol pI family signature 201 215 IPR007118 GO:0005576
Lan8g1493 256 PRINTS Expansin/Lol pI family signature 239 253 IPR007118 GO:0005576
Lan8g1493 256 PANTHER EXPANSIN-A15 8 256 IPR002963 GO:0009664
Lan8g1493 256 SUPERFAMILY Barwin-like endoglucanases 31 182 IPR036908 -
Lan8g1493 256 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 174 253 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1493 Lan-Chr8 21994953 21996877 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1493 8 256 Expansin Gene Family AT4G38210 61.753 2.04e-120 342
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1493 - - gmx:100804002 459.529