Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1479 ATGGTGTATTTGGGGTTTGATATGGTTGAAAGGTTGGAACTTTGGTTGGTTAAGTGGAGGATTGCATTTGGGTGGTGCGTTTTTCTGTTGTTTCTTAGTCCAGTGGTGGGTTTGAGACCCTTAAGAGACAGAATTGGCTCATGGGGCGATGAGTGGCTTTTTTCAAGAAGAGACGGGAGTGACTTAGGTCCATTTTCTCCATGGAACATAACCGGAACATATAGAGGGACTTGGAAATTTCTAGATACCACAAATAGCTCTTCCAAATTTCCAGACATCAGAAAAACAAATGGAAATTCTGTAATTGAGTTGGCTAGTACACCCACAAAGATAACTGGTGTACATTATGTGCAGGGGGTTGTTATATTCCATGATGTGTTCGACAAAGAATACAATGTTGGCGGTGCCCAAATCAGAATAGAAGGTGTATATATATGGCCTTTTAGACAGCTTCGAATGATAGCCAACAGTGGAAAAGAGGGAGGGTTGAGTCAGGATGATGATTATCTTTTATCTAATCCATATCATCTGCTTGGAGTTTTCTCATCTCAAGTATTCCAAGAATCTTCGCGAGATAAGATGTGGAGAAGAAAATCTTCTCCATTGCATGACTTGGAAAAACATTGTAATGTTGAAATTGGTGCACAGGTTTCACGCATGCAATCATCAAAACATGAAGGGGGGCATGATTCTTTCCACCTAGAAGGGTTAATGGAGAGTCCATCGGTGGATGATGATGGAGACTGCTTCTCTCTTTTACAGTTAAATGCATCATCTGTTAACGTTGAAGCTTACTATAATAAAGCAGTGAACTACACGTTGATGGTTACTTTTGTCTCTTTCTTGCAAGTTCTTCTACTGATTCGGCAGATGGAGCACAGCAACACTCAATCTGGGGCTGCTAAGGTTTCAATATTAATGGTTGGTCAGCAAGCTATAATGGATGCTTATCTTTGCCTTTTACATCTCACTGCAGGAATACTAGTTGAATCATTATTTAATGCCTTTGCAACTGCTGCATTTTTCAAGTTTGTGGTTTTCTCAATATTTGAGATGAGATATCTCCTTGCCATCTGGAAAGCAAATAGGCCTGTGAGTAATGGTGAAGGTTGGGAGACAATGAGGCGTGAGCTTTCAGTTTTATACAGCCGTTTTTATGGGATCCTCTTGGGAGGCATTCTGCTCATGTATGAATTCCATTATTATATGAGATCTATTCTTCTTCTCGTATACTCCTTCTGGATACCTCAGATAATCACCAATGTTGTTCGTGATTCACGCAAGCCATTGCATCCTCATTATATCATAGGCATAACTGTTACTCGGCTAGCAATCCCATTATATATTTTCGGTTGTCCTAACAACTTCATACGGATAGAAGCAGACCAGAGGTGGTGTGTCTATTTGACTGTATTTATTGGACTTCAAACTACAGTTCTTCTACTTCAGCACTATCTTGGGTCCCGTTGGTTCATTCCTCACCAGATTCTACCTGAGAAATACAGCTATTTTAGGAGATTTGCTCAAGATACAACTCATGCTGCAGATTGTGTTATTTGCATGACAGCCGTTGATCTTAGTCAGCGGTCTAATGATTGCATGGTAACGCCTTGTGATCATTTTTTCCACTCTGGTTGTTTGCAAAGATGGATGGATATAAAGATGGAGTGCCCAACTTGCCGGCGATCGCTTCCACCAGTCTGA 1704 0.4073 MVYLGFDMVERLELWLVKWRIAFGWCVFLLFLSPVVGLRPLRDRIGSWGDEWLFSRRDGSDLGPFSPWNITGTYRGTWKFLDTTNSSSKFPDIRKTNGNSVIELASTPTKITGVHYVQGVVIFHDVFDKEYNVGGAQIRIEGVYIWPFRQLRMIANSGKEGGLSQDDDYLLSNPYHLLGVFSSQVFQESSRDKMWRRKSSPLHDLEKHCNVEIGAQVSRMQSSKHEGGHDSFHLEGLMESPSVDDDGDCFSLLQLNASSVNVEAYYNKAVNYTLMVTFVSFLQVLLLIRQMEHSNTQSGAAKVSILMVGQQAIMDAYLCLLHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLAIWKANRPVSNGEGWETMRRELSVLYSRFYGILLGGILLMYEFHYYMRSILLLVYSFWIPQIITNVVRDSRKPLHPHYIIGITVTRLAIPLYIFGCPNNFIRIEADQRWCVYLTVFIGLQTTVLLLQHYLGSRWFIPHQILPEKYSYFRRFAQDTTHAADCVICMTAVDLSQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRSLPPV* 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1479 567 PANTHER RING ZINC FINGER PROTEIN 17 566 - -
Lan8g1479 567 SMART ring_2 517 560 IPR001841 -
Lan8g1479 567 Pfam Ring finger domain 516 561 IPR001841 -
Lan8g1479 567 SUPERFAMILY RING/U-box 505 566 - -
Lan8g1479 567 SMART ringv_2 516 561 IPR011016 GO:0008270
Lan8g1479 567 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 504 566 IPR013083 -
Lan8g1479 567 PANTHER TRANSMEMBRANE E3 UBIQUITIN-PROTEIN LIGASE 1-LIKE 17 566 - -
Lan8g1479 567 ProSiteProfiles Zinc finger RING-type profile. 517 561 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1479 Lan-Chr8 21891668 21899676 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1479 517 564 C3H Transcription Factor Family AT4G12190 37.500 9.71e-08 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1479 K23788 - gmx:100802452 982.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g1479 8 21891668 21899676 Lan8g1479 8 21891668 21899676 ECH