Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1466 ATGCTGGAAAATATGGATGATGGAGAAGTTTCAAATGGTTTCCCTCAGAACTTAATAACTGGTTCATCTAATAATCCTAATCTTGTTTTGAAGAGAAAGAGAAACCTCCCAGGAAACCCAGATCCTGAAGCTGAAGTCATAGCCTTATCACCAAAGACACTAATGGCAACAAACAGGTTCTTGTGTGAAACATGTGGGAAGGGTTTCCAAAGGGATCAAAATCTTCAACTTCATCGACGTGGACACAACTTACCTTGGAAGCTGAAGCAGAGAACAAGCACAGAAATAAGGAAACGAGTTTATGTGTGTCCAGAGAAAACTTGTGTCCATCATAACCCTTCAAGGGCTCTTGGAGACTTAACTGGGATAAAAAAGCACTTTTGCAGAAAGCACGGGGAGAAGAAATGGAAGTGTGATAAGTGCTCAAAGTGCTATGCAGTTCAGTCAGATAGGAAAGCACACTCGAAAACCTGTGGAACAAGAGAGTACAAATGTGATTGTGGAACTGTCTTTTCAAGGAGGGACAGCTTCATCACTCACAGGGCCTTCTGTGATGCCTTGGCAGAAGAAACAGCTAGGGTAAATGCAACATCAAACATAAGCAACACCCTAGGAGATAACATTAGTTACAACATCATGGGAGCTCATCTAGGCCCTAACATGGAAACCCATTTTTCTTCAATTTTCAAGCCAGTTTCAACCACTGATCATGAAACAAGTAATCAAACATGTACAGGACTATCCCTTTGGATGGACCAACTATCTCATCAGGCTCATGAAACAATGGTCAATGGAAATATTCATCAACTTGGATCAACCCCAAGATCAGGATCAGCAATATATGGAAACCCATTTAGTCAATGCACAAACAATCCTCCACCCTCTAATAATTATCACCTAAATTGGGTGTTTGAGACTAAACCTTCCTCCAATAGTAACCAAGAGCTTATAGCTAGCACTACTACTTCACTTCCACTAGGCAATATTATTAAGGATGCTACATGTACAAGCCAACTTCTAAGTGTTCCTTCCTTATATAGCACGCAACACCAATCCCACCAAACATCCTCAGCAACAAACATGTCTGCCACAGCTTTGTTGCAAAAGGCTGCTCAAATTGGTGCAACCTCAACTATTGACCCATCATTCCTTGGGAACTTAGGTTTGAAATACAGTAACAGCCTAGGTCAAGATGGGAACAAGCTTTGTCTGATGTATGGCTCAAGTTCAGTGCTAACTAGTGTTGGCAGTGAGGCAGAGAAATCTGCATGTGACTTGTCACAAATGCACCCAGCAAAACGTAGACAAGTACAAAATGAGGAAGGTATTGGAGGGGGGCAAACTAGGGATTTTCTTGGTGTTGGGGTAAAAACAATCTGCCACAATTCATCAATCAACGGATGGATATGA 1410 0.4163 MLENMDDGEVSNGFPQNLITGSSNNPNLVLKRKRNLPGNPDPEAEVIALSPKTLMATNRFLCETCGKGFQRDQNLQLHRRGHNLPWKLKQRTSTEIRKRVYVCPEKTCVHHNPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKCYAVQSDRKAHSKTCGTREYKCDCGTVFSRRDSFITHRAFCDALAEETARVNATSNISNTLGDNISYNIMGAHLGPNMETHFSSIFKPVSTTDHETSNQTCTGLSLWMDQLSHQAHETMVNGNIHQLGSTPRSGSAIYGNPFSQCTNNPPPSNNYHLNWVFETKPSSNSNQELIASTTTSLPLGNIIKDATCTSQLLSVPSLYSTQHQSHQTSSATNMSATALLQKAAQIGATSTIDPSFLGNLGLKYSNSLGQDGNKLCLMYGSSSVLTSVGSEAEKSACDLSQMHPAKRRQVQNEEGIGGGQTRDFLGVGVKTICHNSSINGWI* 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1466 469 ProSiteProfiles Zinc finger C2H2 type domain profile. 60 82 IPR013087 -
Lan8g1466 469 Gene3D Classic Zinc Finger 56 83 - -
Lan8g1466 469 SUPERFAMILY beta-beta-alpha zinc fingers 59 156 IPR036236 -
Lan8g1466 469 MobiDBLite consensus disorder prediction 10 28 - -
Lan8g1466 469 PANTHER F-BOX ASSOCIATED PROTEIN 6 458 - -
Lan8g1466 469 MobiDBLite consensus disorder prediction 1 28 - -
Lan8g1466 469 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 6 458 - -
Lan8g1466 469 ProSitePatterns Zinc finger C2H2 type domain signature. 62 82 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1466 Lan-Chr8 21801771 21804937 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1466 25 469 IDZ Gene Family AT1G03840 51.703 1.51e-144 421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan8g1466 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1466 K25870 - qsu:112011855 627.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g1466 8 21801771 21804937 Lan8g1466 8 21801771 21804937 ECH