Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1454 ATGGAAATGGAAGCTTTTGAGTGGGGATCTGGCATTAATGGAGATGGGTCTTATAAGAGAGTTATCAATGAAGGGTTTCAGGTGAATAACCATGGTGTAATGGGAAGTGGGTATGGTTCATCTTTGTCTTTGGTTTTGGATAGGGAGAAAAAGGAACTTGTGGAAGCACCTGTGAAATTAGAACGAAAGGGTGTATCCACTGAGAGAAGCATTGAAGCATTGAAGAATCATAGTGAGGCAGAGAGGAATAGGAGATCAAGGATTAATGCACATCTTGATACACTTCGTGCTGTGATTCCTGGTGCTATCAAGATGGATAAAGCATCCTTACTTGCTGAGGTTATTGGACACTTGAAAGAGCTGAAAAGGAATGCAGGACAAGCTTGTGAAGGTTTAATGATACCGAAGGACGTTGACGAAATAAGAGTCGAAGAACATGAGGGTGGTTTGAATGGTTTTCGATATTCAATTAAGGCATCTCTATGTTGTGAATATAAACCTGGACTATTGTCAGATATAAGACAAGCACTAGATGCGCTTCATCTTATGATAATGAAGGCAGATATTGCAACCTTGGGAGACAGGATGAAGAATGTCTTTGTGATAATTAGCTGCGAAGAGCAGAATTTTGAAGATGCCGAATACCGTCAATTTCTTGCTGGCTCTGTTCACCAAGCTCTTAGGTCTGTACTAAATAGATTTTCTGTTTCACAGGACTTCTTAGGAACCAGAAAGAGAAGGAGAATTTCTATATTTTCATCATCTCTAGAAGATTTATTGTAA 783 0.3946 MEMEAFEWGSGINGDGSYKRVINEGFQVNNHGVMGSGYGSSLSLVLDREKKELVEAPVKLERKGVSTERSIEALKNHSEAERNRRSRINAHLDTLRAVIPGAIKMDKASLLAEVIGHLKELKRNAGQACEGLMIPKDVDEIRVEEHEGGLNGFRYSIKASLCCEYKPGLLSDIRQALDALHLMIMKADIATLGDRMKNVFVIISCEEQNFEDAEYRQFLAGSVHQALRSVLNRFSVSQDFLGTRKRRRISIFSSSLEDLL* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1454 260 CDD ACT_UUR-ACR-like 160 231 - -
Lan8g1454 260 SMART finulus 78 127 IPR011598 GO:0046983
Lan8g1454 260 Gene3D - 67 128 IPR036638 GO:0046983
Lan8g1454 260 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 76 125 IPR036638 GO:0046983
Lan8g1454 260 Pfam Helix-loop-helix DNA-binding domain 76 121 IPR011598 GO:0046983
Lan8g1454 260 PANTHER TRANSCRIPTION FACTOR BHLH30 21 256 IPR045847 GO:0003700|GO:0006355
Lan8g1454 260 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 21 256 - -
Lan8g1454 260 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 72 121 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1454 Lan-Chr8 21660980 21662963 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1454 59 250 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 41.327 1.24e-33 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan8g1454 HLH 3.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1454 - - gmx:100788819 381.333
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g1454 8 21660980 21662963 Lan8g1454 8 21660980 21662963 ECH