Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1432 ATGGTTTCAGAGGAAAACAGCAATTGGCTTTTGGATTGTGACTTCATTGACGATATTCAAGTTCCTCTTTCTTCCTCCACTTTCAATTGGGCCCCACACCCTTTCAACCCTTTTCCCATTACCAGTGTTGAAATTGATGGCTCATTGGGGGATTCTAGTGGTCTCAAAGAGTCTGGTTCAAAGAAGAGGGGTAGATCTGAGGCATGTACTGCTTCTAGCTCCAAAGCATGCCGGGAGAAGCTGCGGCGGGATAGGCTTAATGACAAGTTTATTGAATTAGGCTCCATTTTGGAGCCTGGAAGGCCTCCGAAAACAGACAAGGCTACTATACTGATTGATGCTGTCCAAATGGTGACACAGTTACGGGGTGAAGCCCAGAAGTTGAAAGATTCAAATATGGATCTTCAAGAAGAGATTAAAGAGTTGAAGGCTGAGAAGAATGAACTTCGTGATGAGAAACAGAGGCTGAAGGCAGAGAAAGAGAAGTTGGAGAAGCAGCTGATGTCATTGAATGCACAGCCTAGTTTCTTGCCTCCCCCTACTGCAATCCCTACTACTTTTGCTGCACAAGGCCAAGCCTCTTTTGCTGCACAAGGCCAAGCCGCTTTTGCTGCACAAGGCCAAGCCTTTGGCAACAAGTTGGTACCTTTTATTAGTTATCCAGGAGTTGCAATGTGGCAATTTATGCCACCTGCTTCAGTGGATACCTCACAGGATCATGTACTCCGTCCTCCAGTCGCCTAA 744 0.4624 MVSEENSNWLLDCDFIDDIQVPLSSSTFNWAPHPFNPFPITSVEIDGSLGDSSGLKESGSKKRGRSEACTASSSKACREKLRRDRLNDKFIELGSILEPGRPPKTDKATILIDAVQMVTQLRGEAQKLKDSNMDLQEEIKELKAEKNELRDEKQRLKAEKEKLEKQLMSLNAQPSFLPPPTAIPTTFAAQGQASFAAQGQAAFAAQGQAFGNKLVPFISYPGVAMWQFMPPASVDTSQDHVLRPPVA* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1432 247 MobiDBLite consensus disorder prediction 49 73 - -
Lan8g1432 247 PANTHER BHLH DOMAIN CLASS TRANSCRIPTION FACTOR 1 247 - -
Lan8g1432 247 PANTHER BHLH TRANSCRIPTION FACTOR 1 247 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Lan8g1432 247 Pfam Helix-loop-helix DNA-binding domain 74 121 IPR011598 GO:0046983
Lan8g1432 247 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 70 121 IPR011598 GO:0046983
Lan8g1432 247 Gene3D - 73 151 IPR036638 GO:0046983
Lan8g1432 247 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 74 141 IPR036638 GO:0046983
Lan8g1432 247 CDD bHLH_AtILR3_like 75 150 - -
Lan8g1432 247 Coils Coil 118 173 - -
Lan8g1432 247 SMART finulus 76 127 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1432 Lan-Chr8 21466007 21468266 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1432 1 247 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 65.490 3.51e-108 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan8g1432 HLH 5.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1432 - - gmx:100788858 338.961
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g1432 8 21466007 21468266 Lan8g1432 8 21466007 21468266 ECH
Lan8g1432 8 21466007 21468266 Lan13g0552 13 4263291 4266830 LSH