Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1411 ATGAACCAAAAGGCCAACGTTTCTAAAGAGCTCAACGCCAAACACAAAAAGATATTGGAAGGACTTCTAAAATTACCAGAGAATAAGGAATGTGCTGACTGCAAAGCTAAAGGTCCAAGATGGGCTAGTGTCAATCTTGGCATCTTTATTTGCATGCAGTGTTCAGGAATACATCGAAGTCTTGGGGTACACATATCAAAGGTTCGCTCTGCAACTTTGGACACTTGGCTCCCAGAGCAGGTTGCATTCATTCAATCGATGGGAAATAAGAAAGCAAATAGTTACTGGGAAGCAGAATTACCTCCACATTATGATAGAGTTGGAATCGAAAATTTCATTCGTGCAAAGTATGAAGAGAAGAGATGGGCTGCAAGGGATGGGAGACCAGCATCACCTTCTAGACTGCAAGAAGAAAAAGCTCCTTCACATTGGCAGAGGCCTGTGGAAAGAGTTGGTCATGGTTATGGGGCTACATCTGAAAATACTTTTGTGGAAAGGAAGAAAGTTTTATCATCAAATGCAATTCCTGGTATAAGAATTAGTGTTCCTGCCCCTCCCAAAGGACCTGAGCAGCAATTAATTTCTGAACAGGTAACACCTGTGACAAAACCTCAGCATGTTGAGAAAGTGAAACCCATGGCAGCACAACCGCAAGCTGAAACTTTAAAGCAGACTACTGGATCATACCAAGATACCCCTCCTAAATATGACTTTGCTACAGACCTTTTTGACATGCTGTCTGTGGATGGTCCGAGTGAAAAGGGCTCAGAGGCAGCTGGTGCTCCTGCTGATGATAATAACTGGGCAGCATTTCAGTCTGCTGCTGAGGCATCAACAGCTGAGGAGACAGACATCCCAAGTGCAGTTGAGAGTGCACCCCTGTCTACCTCTGGAATTGAGGATCTATTTAAAGACTCACCTTCAATGACACCTAGCTTAGCCCCAGAGAAACCACAAAAAGATATAAAAAATGATATCATGAGCCTCTTTGAGAAGACCAATGTGGTGTCTCCATTTGCTATGCATCAACAGCAGCTAGCCATGCTGGCACAGCAACAGTCCCTTCTAATGGCTGCCGCAGCTAAATCTGCTGGTGGGGATCCCAAGCATCCTTCTAGTGTACAACAACATCAACTGGCCATGCTGGCACAACAACAGTCTCTTCTAATGGCTGCAGCAGCTAAATCTGCTGGTGGGGATTCCAAGTATCCTTCAAGCGTACAACAACCCGGGTCCAAGATTCCTGTCCAAAGTTGGCCAGCTTCTGGTTACCCAATTCCTGGAGTAATACCCATGGGTGGTCAGGGTCAGGGTCAGGGAGAGTTGCATAATCTCATGCAGACGATGAACATGACTGGAGTGCATCCAGGAGCGAGCTCAGTTCAATATCCACCTTCTAGTTTCTATCCCATGGGGCAAATTGCTCCAGTTAATGGGACAATGACAACAGGAGTGAGTAAACCCCAATCTGCAGATCCAGTATCATCAACCACTTCGCAGAAAGGGAAGGATTATGATTTTTCCTCCTTGACAGAAGGGATGTTTGCGAAACAATGA 1557 0.4534 MNQKANVSKELNAKHKKILEGLLKLPENKECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNKKANSYWEAELPPHYDRVGIENFIRAKYEEKRWAARDGRPASPSRLQEEKAPSHWQRPVERVGHGYGATSENTFVERKKVLSSNAIPGIRISVPAPPKGPEQQLISEQVTPVTKPQHVEKVKPMAAQPQAETLKQTTGSYQDTPPKYDFATDLFDMLSVDGPSEKGSEAAGAPADDNNWAAFQSAAEASTAEETDIPSAVESAPLSTSGIEDLFKDSPSMTPSLAPEKPQKDIKNDIMSLFEKTNVVSPFAMHQQQLAMLAQQQSLLMAAAAKSAGGDPKHPSSVQQHQLAMLAQQQSLLMAAAAKSAGGDSKYPSSVQQPGSKIPVQSWPASGYPIPGVIPMGGQGQGQGELHNLMQTMNMTGVHPGASSVQYPPSSFYPMGQIAPVNGTMTTGVSKPQSADPVSSTTSQKGKDYDFSSLTEGMFAKQ* 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1411 518 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Lan8g1411 518 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Lan8g1411 518 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Lan8g1411 518 SUPERFAMILY ArfGap/RecO-like zinc finger 15 124 IPR037278 -
Lan8g1411 518 MobiDBLite consensus disorder prediction 123 148 - -
Lan8g1411 518 MobiDBLite consensus disorder prediction 481 506 - -
Lan8g1411 518 CDD ArfGap 19 117 - -
Lan8g1411 518 PANTHER ARF GTPASE ACTIVATOR 373 518 - -
Lan8g1411 518 PANTHER ARF GTPASE ACTIVATOR 1 377 - -
Lan8g1411 518 MobiDBLite consensus disorder prediction 123 146 - -
Lan8g1411 518 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 130 IPR001164 GO:0005096
Lan8g1411 518 Pfam Putative GTPase activating protein for Arf 17 125 IPR001164 GO:0005096
Lan8g1411 518 SMART arf_gap_3 16 130 IPR001164 GO:0005096
Lan8g1411 518 Gene3D Arf GTPase activating protein 1 129 IPR038508 -
Lan8g1411 518 MobiDBLite consensus disorder prediction 298 318 - -
Lan8g1411 518 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 377 IPR044520 GO:0005096
Lan8g1411 518 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 373 518 IPR044520 GO:0005096
Lan8g1411 518 MobiDBLite consensus disorder prediction 211 231 - -
Lan8g1411 518 MobiDBLite consensus disorder prediction 481 518 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1411 Lan-Chr8 21153439 21159500 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1411 16 164 C2H2 Transcription Factor Family AT4G05330 41.401 9.56e-30 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1411 K12486 - gmx:100807561 719.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g1411 8 21153439 21159500 Lan8g1411 8 21153439 21159500 ECH