Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1390 ATGGAATCCACATGCTTTGACTCTACTGGAGGAGTCTCACCAGAGAAAAAAATGAAATTTACTTCAGCAGAGACAACAGTTTCTAGTAATGATGACGGTTGCTTTGATTGCAATATCTGCTTGGAATCAGCTCATGAACCTGTAGTTACTCTCTGCGGTCACCTGTACTGCTGGCCATGCATATATAAGTGGATTCATGTCCAAAGCTCTTCTGTTGAACCCGATCAGCAGCAGACATGTCCAGTTTGTAAAGCGGAGATCTCCCATGCTTCACTAGTCCCTCTTTATGGCCGTGGAACATCTAATTCAGAATCCGATGAAGCCAAGAAGCTTCAGATGGGTCTAGGAATACCTCATAGGCCACCTCCTTACAACTTGAATGCTACGTCAGCTTCTACTCGTGCATCATCGACTTCACATCCCACTCAGCAACTTCATCCAAGTTATTTCCAGTCACAACCGCGACCAATTCATTATCAACAATACTTTCCTCACATGTATGGAGGTTATGGCACCAATGGATTACCTTATCTTGGAGGAGCTGCTATGACTAGTTTTTTCAATCCAATGATTGGTATGTTTGGGGATATGGTTTTGACAAGGATTTTCGGGGTTTCAGATGCAAATTTGATCCCTTACCCTCACAACGGAAGTGGCAGTCCTACTAGGATGAGAAGGCAGGAGATCCAAATTGACAAGTCTCTGAACAGAGTATCTATCTTTCTTCTCTGTTGCATCATTTTGTGTCTTCTCTTATTTTGA 762 0.4291 MESTCFDSTGGVSPEKKMKFTSAETTVSSNDDGCFDCNICLESAHEPVVTLCGHLYCWPCIYKWIHVQSSSVEPDQQQTCPVCKAEISHASLVPLYGRGTSNSESDEAKKLQMGLGIPHRPPPYNLNATSASTRASSTSHPTQQLHPSYFQSQPRPIHYQQYFPHMYGGYGTNGLPYLGGAAMTSFFNPMIGMFGDMVLTRIFGVSDANLIPYPHNGSGSPTRMRRQEIQIDKSLNRVSIFLLCCIILCLLLF* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1390 253 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 5 253 IPR045103 GO:0005783|GO:0006511|GO:0061630
Lan8g1390 253 ProSitePatterns Zinc finger RING-type signature. 52 61 IPR017907 -
Lan8g1390 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 114 IPR013083 -
Lan8g1390 253 ProSiteProfiles Zinc finger RING-type profile. 37 84 IPR001841 -
Lan8g1390 253 SUPERFAMILY RING/U-box 32 96 - -
Lan8g1390 253 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA3-LIKE 5 253 - -
Lan8g1390 253 SMART ring_2 37 83 IPR001841 -
Lan8g1390 253 CDD RING-HC_AtRMA_like 35 85 - -
Lan8g1390 253 Pfam Zinc finger, C3HC4 type (RING finger) 37 83 IPR018957 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1390 Lan-Chr8 20800398 20802668 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1390 10 239 C3H Transcription Factor Family AT4G27470 48.511 1.34e-60 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1390 K10666 - gmx:100817526 346.665
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g1390 8 20800398 20802668 Lan8g1390 8 20800398 20802668 ECH