Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1377 ATGGCTCCAAGAGAAAAACCATCGGATCTCACCGGTTCAAACCCGACCCAAAAAGAGATCCGCTATAGAGGAGTCAGAAAGAGACCTTGGGGCCGTTACGCCGCTGAAATCCGCGACCCTGGCAAGAAAACACGTGTTTGGCTCGGCACCTTTGACACCGCAGAAGAAGCTGCACGAGCCTATGATAAGGCGGCGCGTGAGTTTCGTGGTGCGAAGGCCAAAATTAATTTCCCCACCGCTTCTGAACTCATTAACCTCTCCGCGCGTAGTCCTTGTCAGAGCAGCACCGTTGAATCCTCTTCTCCTCCGCCGTTGGATATCACTGTCTCCCCACACTCTCTCGAAGGTTCGTTCGTGTTCCCGGTGACTCGTCCGGTGTTGTTCTTCGATGTTTTTGCTAGGACTGAGACGCGCGTGTTCGATCGTCCGGTTCCTGATATTATCCATGGCTTCTGCGGCGGAGCTAATAGTGACTCCGTTTCATCCTCCGTCGTTGACAGAGTTCCACATCGGAGAATGTTAGATCTTGACCTTAACTTCCCTCCTCCGCCGGAGGTTGCTTGA 564 0.5319 MAPREKPSDLTGSNPTQKEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDKAAREFRGAKAKINFPTASELINLSARSPCQSSTVESSSPPPLDITVSPHSLEGSFVFPVTRPVLFFDVFARTETRVFDRPVPDIIHGFCGGANSDSVSSSVVDRVPHRRMLDLDLNFPPPPEVA* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1377 187 PANTHER ERF FAMILY PROTEIN 1 112 - -
Lan8g1377 187 PRINTS Ethylene responsive element binding protein signature 22 33 IPR001471 GO:0003700|GO:0006355
Lan8g1377 187 PRINTS Ethylene responsive element binding protein signature 44 60 IPR001471 GO:0003700|GO:0006355
Lan8g1377 187 SUPERFAMILY DNA-binding domain 21 79 IPR016177 GO:0003677
Lan8g1377 187 Gene3D AP2/ERF domain 20 80 IPR036955 GO:0003700|GO:0006355
Lan8g1377 187 SMART rav1_2 21 84 IPR001471 GO:0003700|GO:0006355
Lan8g1377 187 ProSiteProfiles AP2/ERF domain profile. 21 78 IPR001471 GO:0003700|GO:0006355
Lan8g1377 187 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 112 - -
Lan8g1377 187 Coils Coil 54 74 - -
Lan8g1377 187 Pfam AP2 domain 21 70 IPR001471 GO:0003700|GO:0006355
Lan8g1377 187 MobiDBLite consensus disorder prediction 1 23 - -
Lan8g1377 187 CDD AP2 21 80 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1377 Lan-Chr8 20669583 20670562 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1377 1 133 AP2-EREBP Transcription Factor Family AT3G15210 53.289 2.85e-47 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lan8g1377 AP2 3.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1377 K09286 - gmx:100786709 224.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g1377 8 20669583 20670562 Lan8g1377 8 20669583 20670562 ECH
Lan8g1377 8 20669583 20670562 Lan16g0155 16 1221266 1221867 ECH