Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1363 ATGGCGGAAACAAAGCCAGGTAGAAAACACGTGGATTCCTTCACCATCCATGGCACCAACATAATCGTAAAAGTTGGAGACAATGTTTTGCTGCGGCCTTTGGACACGACGAAGCCACCGTATGCGGCGGTCGTGGAAAAGATCGAAAAAGATAAGAGGAACAATATTGAAGTGCTTGTGAGATGGTATTACAGGCCTGAAGATTCAATAGGGGGTCGAAGGCAATTCCATGGAGAAAAAGAGCTTTTTTTATCTGATCATTATGATGTTCAGAATACTTACGCTTTTGAAGGAAAATGTGTTGTTCACTCTTTCAAGGACTACACTAAGCTTGAGAATGTAACTGCTGAGGATTACTATTGTAGATTTGAGTATAAGGCTGTAACTGGGGCTTTCACCCCTGAGAGTGTTGCTGTGTATTGCAAATGTGAGATGCCTTATAACCCAGATGAACTCATGGTGCAATGTGAGGAGTGCATGGATTGGTACCATCCTAAGTGCTTGGGAATGACTATTGAAGAAGCAAAGAAACTAGAACTTTTTGTATGTTCTGAATGTTCATCTGGTGATGAGTTGAAGAAACCCCTAGCTACATTATTTGCATCACCAAGAGCTGATGGCAAGGTGTCGCCTAAGCGGCGAAAGATAGAACCATGA 657 0.4247 MAETKPGRKHVDSFTIHGTNIIVKVGDNVLLRPLDTTKPPYAAVVEKIEKDKRNNIEVLVRWYYRPEDSIGGRRQFHGEKELFLSDHYDVQNTYAFEGKCVVHSFKDYTKLENVTAEDYYCRFEYKAVTGAFTPESVAVYCKCEMPYNPDELMVQCEECMDWYHPKCLGMTIEEAKKLELFVCSECSSGDELKKPLATLFASPRADGKVSPKRRKIEP* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1363 218 ProSiteProfiles BAH domain profile. 21 136 IPR001025 GO:0003682
Lan8g1363 218 ProSitePatterns Zinc finger PHD-type signature. 141 186 IPR019786 -
Lan8g1363 218 Pfam BAH domain 23 133 IPR001025 GO:0003682
Lan8g1363 218 PANTHER BNAC03G64850D PROTEIN 4 212 IPR045205 GO:0006325|GO:0035064
Lan8g1363 218 Pfam PHD-finger 140 188 IPR019787 -
Lan8g1363 218 SMART PHD_3 140 187 IPR001965 -
Lan8g1363 218 PANTHER OS08G0421900 PROTEIN 4 212 - -
Lan8g1363 218 Gene3D - 1 134 IPR043151 -
Lan8g1363 218 ProSiteProfiles Zinc finger PHD-type profile. 138 189 IPR019787 -
Lan8g1363 218 SUPERFAMILY FYVE/PHD zinc finger 131 192 IPR011011 -
Lan8g1363 218 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 197 IPR013083 -
Lan8g1363 218 SMART BAH_4 21 136 IPR001025 GO:0003682
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1363 Lan-Chr8 20455214 20459711 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1363 41 132 Core DNA Replication Machinery Family AT4G14700 26.882 5.48e-07 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lan8g1363 BAH 2.6e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1363 K25868 - gmx:100800993 363.229