Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1347 ATGTCTCTTAGGAGAATCTTCCGTTCTCGCAAATTCTCCACATCCTTCAAGGAATTCGGAACCACCTCCGACGGTGTCGACCGCCGAAACGGAATCGATTCCGGCGAGGAGGATGGATCGCCGGAACAGGGCAATGCATGGTCGACGATGCTGCCGGAGATTCTCGGGGAGATTATACGGCGAGTGGAGGCTGATGAGAAACAGTGGCCGCAGCGCCAAAACGTCGTCGCTTGCGCATGCGTGTGTAAGAGGTGGAGAGATATCACACGAGAGATCATTAGGGCAATTCCTCAAACTGGGAAAATCACTTTCCCTTCTTGCCTCAAACAGCCAGGACCAAGCAACCTTCCCCAGCAATGTGTTATAAAGCGTAACAAGAAGACCTCAACTTTTTACCTATATCTTGCCCTTACACCATCATTTACAGACAAAGGGAAGTTTCTCTTAGCAGCTAGAAGAATTAGGCATGGTGTCCATACGGAGTATATAATATCACTTGATGCAGATGACTTGTCCCAAGGAAGCAATGCTTATGTTGGAAAGTTAAGCTCAGATTTTCTTGGCACCAACTTCACAGTATATGACAGCCAGCCGCCTCATAGCAGTGCAAAACCATCAAACAGCAGGGTCCGCCGTCGTTTTGCCAGCAAGCAGATAAGCCCTCAAGTTCCTGCAGGCAACTTTGAGGTGGGGAAGGTGTCCTACAAGTTCAATCTTTTGAAATCAAGAGGGCCAAGGAGGATGCTTTGCTCACTGACTTGTCCCGTCACATCATCAGAAGACAGTTCAGATAGCAAAAATCTGGAGATGAACCATAAAGATCATTTTGCTCCTGGCTCCTTAATCTTGAAGAACAAAGCTCCAAGGTGGCACGAGCATTTGCAGTGCTGGTGTTTGAATTTCCATGGTCGTGTAACTGTAGCATCAGTGAAGAACTTTCAGCTGGTCGCCACTGTGGACCGGAGTAAACCAGACGGAAAAGGCGATGAAGAAACCGTGCTCCTTCAGTTTGGGAAGGTAGGGGATGATACCTTTACCATGGATTATAGGAATCCCTTATCTGCCTTCCAGGCATTTGCCATTTGCTTGAGTAGCTTTGGCACTAAGCTGGCATGTGAGTAA 1122 0.4786 MSLRRIFRSRKFSTSFKEFGTTSDGVDRRNGIDSGEEDGSPEQGNAWSTMLPEILGEIIRRVEADEKQWPQRQNVVACACVCKRWRDITREIIRAIPQTGKITFPSCLKQPGPSNLPQQCVIKRNKKTSTFYLYLALTPSFTDKGKFLLAARRIRHGVHTEYIISLDADDLSQGSNAYVGKLSSDFLGTNFTVYDSQPPHSSAKPSNSRVRRRFASKQISPQVPAGNFEVGKVSYKFNLLKSRGPRRMLCSLTCPVTSSEDSSDSKNLEMNHKDHFAPGSLILKNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDRSKPDGKGDEETVLLQFGKVGDDTFTMDYRNPLSAFQAFAICLSSFGTKLACE* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1347 373 Pfam Tub family 108 368 IPR000007 -
Lan8g1347 373 SUPERFAMILY Tubby C-terminal domain-like 98 373 IPR025659 -
Lan8g1347 373 ProSitePatterns Tub family signature 1. 301 314 IPR018066 -
Lan8g1347 373 PANTHER TUBBY-RELATED 1 373 - -
Lan8g1347 373 PANTHER TUBBY-LIKE F-BOX PROTEIN 7 1 373 - -
Lan8g1347 373 Pfam F-box domain 52 92 IPR001810 GO:0005515
Lan8g1347 373 PRINTS Tubby superfamily signature 162 178 IPR000007 -
Lan8g1347 373 PRINTS Tubby superfamily signature 178 202 IPR000007 -
Lan8g1347 373 PRINTS Tubby superfamily signature 227 254 IPR000007 -
Lan8g1347 373 PRINTS Tubby superfamily signature 283 300 IPR000007 -
Lan8g1347 373 PRINTS Tubby superfamily signature 301 317 IPR000007 -
Lan8g1347 373 PRINTS Tubby superfamily signature 330 349 IPR000007 -
Lan8g1347 373 PRINTS Tubby superfamily signature 351 373 IPR000007 -
Lan8g1347 373 MobiDBLite consensus disorder prediction 19 46 - -
Lan8g1347 373 Gene3D Tubby Protein; Chain A 103 373 IPR025659 -
Lan8g1347 373 ProSitePatterns Tub family signature 2. 358 373 IPR018066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1347 Lan-Chr8 20283600 20288055 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1347 1 373 TUB Transcription Factor Family AT1G53320 70.235 0.0 529
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lan8g1347 Tub 1.9e-99 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1347 K19600 - gmx:100808096 598.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g1347 8 20283600 20288055 Lan8g1347 8 20283600 20288055 ECH