Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1281 ATGGACATAGATCTTAGATTACCTTCTGGTGAACATGATAAAGAGGATCAAGAAACAAATACAATTGATAACCTATTGGATACAGAAGATAAATTGCGCAATGGTGATATAGAGGGAAGAAATATGGTTGATGCTTGTGTTGAGGTACATCCTCTCGATGGCGGAGACTTGAATTCACCCACAGTAGATATGGTAATGTTTAAGGAAGAAGCAAATCTTGAGCCACTTTCTGGCATGGAATTTGAGTCTCATGGGGAAGCGTATTCTTTCTACCAGGAATATGCTCGGTCAATGGGATTCAACACTGCAATACAAAATAGCCGCCGATCAAAAACGTCAAGAGAATTTATAGATGCAAAGTTTGCCTGTTCCAGATACGGAACAAAACGAGAGTATGAAAAATCAGTAAACCGCCCGCGTGCCAGGCAGAACAATCAGGAATCGGAAAATTCAACTGGTAGGAGATCTTGTTCAAAGATCGATTGTAAAGCAAGCATGCATGTAAAAAGAAGGTCAGATGGAAAATGGGTTATACATAGTTTTGTGAAGGAGCATAATCATGAGCTTTTACCAGCCCAAGCTGTTAGTGAACAAACAAGAAAAATGTATGCTGCGATGGCTAGACAGTTTGCTGAATACAAAACTGTGGTTGGTCTCAAGCACGAGAAAAACCCATTTGATAAAGGCCGGAATTTCGGCCTGGAGTCAGGAGAGGCTAAACGTATGCTTGAGTTTTTTACACAGATGCAAAATATGAATTCTAACTTCTTTTATGCAGTAGATATTGGTGAGGATCTACGCCTGAGAAGTCTTTTGTGGGTTGATGCTAAAAGTAGGCATGACTATATCAACTTTTGTGATGTTGTGTCTTTTGACACCACCTATGTTAGAAACAAGTATAAGATGCCACTGGTTCTTTTTGTTGGGGTGAATCAGCACTATCAGTTTATATTACTTGGTTGTGCCTTGATATCAGATGAAAGTGCCACCACTTATTCTTGGCTTATGCGGACATGGCTGAAAGCAGTTGGTGGTCAAGTTCCGAAAGTGATAATTACTGACCATGACAAGACTTTGAAGTCAGTTGTGTCAGATATCTTTCCTAATTCACGTCATTGTGTATGTTTATGGCATATATTGGGGAAGGTTCTTGAAAATCTGACTCATGTAATCAAAAGACATGACAATTTTATGTCAAAATTTGAAAAATGCATCTATAGGTCATGGACAAGTGATGAATTTGAGAAGAGGTGGTGGAAAATTGTTGATCGTTTTGAACTCCAGGAGGATGAATGCATGCAGTCACTGTATGAAGATCGGAAGTTATGGGCACCAACATTCATGAAGAACATTTTCTTAGGTGGTATGTCCACTGTCCAGCGATCTGAAAGTGTAAATTCCTTCTTCGATAAATATGTTCATAAGAAGACCTCTGTGCAAGATTTTGTCAAACAGTATGAAGCAATCTTGCAAGACAGATATGAGGAGGAAGCAAAAGCAGATTGTGATACTTGGAATAAAGTTGCAACATTAAAAACTCCCTCACCTTTAGAGAAGAGTGTTGCAGGGATTTGCACCCATGCAGTATTCAAGAAGATTCAAGCTGAGGTTATTGGTGCTGTTGCTTGTCACCCGAAAAGTGAAGGACAGGATGGCACAGGCATTACTCACATGGTTCATGATATGGAAACAAATCAAGACTTCATAGTTGGGTTAAATAACATAAGATCAGAGGTATCATGTATATGTCGTCTATTTGAATATAGAGGTTATCTTTGTCGACATGCATTGGTTGTTCTTCAATATTCTGGTCAGTCGGTGATGCCATCCCAATATATTTTGAAGCGGTGGACAAAAGATGCAAAGATGAGGCATATGATGGGAGAAGAATCTGAACATATGCTATCTAGGGGGCAACGGTACAATGAGTTATGCCAGCGAGCACTGAAACTGAGTGAAGAAGGATCCCTGTCTCAAGAGAGTTACAGCATTGCATTCCATGCACTACATGAAGCATACAAAAATTGTGTGAGTGTAAACAGTTCTAGTAAGAGTCCTACAGAAGCTGGAACTTCCGCTGTTCATGGCCAGCTTTCCACTGAAGAAGATACCCAGAGTAGAAATATGGGTAAGCCAAGCCGAAAGAAAAATCCAACCAAAAAGAAAAAGTTGAGCTGTGAGCCTGAAGTGATGAATGCTGGGGCAGTAGATAACTTGCAACAAATGGATAAATTCAATGCAAGAGCAGCAGCTGTAACCCTTGATGGTTATTACGGCGCACAACAGAATGTTCAGGGAATGTTGAACTTAATGGGACCGACACGTGATAATTACTTCGGGAATCAACACACTATTCAGGGGCTGGGATCAATGAGTTCCATACCAACAAGCCAAGATGGTTATTATGGTGCACATCAGAGCATGCCTGGTCTGGCACAACTGGATTTTTTGCGAACCGGTTTCGCATATGGCATGCGGGATGATCCTAATGTAAGAGCAGCACAGTTGCATGAGGATCAATCAAGACACACATGA 2535 0.4055 MDIDLRLPSGEHDKEDQETNTIDNLLDTEDKLRNGDIEGRNMVDACVEVHPLDGGDLNSPTVDMVMFKEEANLEPLSGMEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYEKSVNRPRARQNNQESENSTGRRSCSKIDCKASMHVKRRSDGKWVIHSFVKEHNHELLPAQAVSEQTRKMYAAMARQFAEYKTVVGLKHEKNPFDKGRNFGLESGEAKRMLEFFTQMQNMNSNFFYAVDIGEDLRLRSLLWVDAKSRHDYINFCDVVSFDTTYVRNKYKMPLVLFVGVNQHYQFILLGCALISDESATTYSWLMRTWLKAVGGQVPKVIITDHDKTLKSVVSDIFPNSRHCVCLWHILGKVLENLTHVIKRHDNFMSKFEKCIYRSWTSDEFEKRWWKIVDRFELQEDECMQSLYEDRKLWAPTFMKNIFLGGMSTVQRSESVNSFFDKYVHKKTSVQDFVKQYEAILQDRYEEEAKADCDTWNKVATLKTPSPLEKSVAGICTHAVFKKIQAEVIGAVACHPKSEGQDGTGITHMVHDMETNQDFIVGLNNIRSEVSCICRLFEYRGYLCRHALVVLQYSGQSVMPSQYILKRWTKDAKMRHMMGEESEHMLSRGQRYNELCQRALKLSEEGSLSQESYSIAFHALHEAYKNCVSVNSSSKSPTEAGTSAVHGQLSTEEDTQSRNMGKPSRKKNPTKKKKLSCEPEVMNAGAVDNLQQMDKFNARAAAVTLDGYYGAQQNVQGMLNLMGPTRDNYFGNQHTIQGLGSMSSIPTSQDGYYGAHQSMPGLAQLDFLRTGFAYGMRDDPNVRAAQLHEDQSRHT* 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1281 844 Pfam FAR1 DNA-binding domain 89 191 IPR004330 -
Lan8g1281 844 Pfam MULE transposase domain 288 380 IPR018289 -
Lan8g1281 844 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 49 774 IPR031052 GO:0006355
Lan8g1281 844 MobiDBLite consensus disorder prediction 1 21 - -
Lan8g1281 844 ProSiteProfiles Zinc finger SWIM-type profile. 568 604 IPR007527 GO:0008270
Lan8g1281 844 MobiDBLite consensus disorder prediction 132 157 - -
Lan8g1281 844 MobiDBLite consensus disorder prediction 680 706 - -
Lan8g1281 844 MobiDBLite consensus disorder prediction 680 727 - -
Lan8g1281 844 PANTHER FAR-RED ELONGATED HYPOCOTYLS 3-RELATED 49 774 - -
Lan8g1281 844 Pfam SWIM zinc finger 580 602 IPR007527 GO:0008270
Lan8g1281 844 SMART 26again6 579 606 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1281 Lan-Chr8 19312208 19317895 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Lan8g1281 FAR1 3e-27 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1281 - - gmx:100817034 1478.77