Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1265 ATGAATGATGGTAGACAAATGGGGTTGCATTATGTAGATAATGGTTTTCCTTATGCTGTTAATGAAAGCTTCACAGGTTTCTATCCACATGTTCCTCTCAATTATGCTTATGCTGGCTCAATGCCTGATCAGGAAAGTGTCTACTGGTCAATGAATATGAATCCATATAAGTTTGGATTGACTGGCCCTGGGAGCACATCTTATTATGGTTGTTATGAGGTAAATGGTAATTTGCCAAGAATGGAGATAAACAGGGCAGAGTGGGAATACCCTTCTGTAATGATCACTGAGGAACCAGCTTCAACAGAGTCTCCACCTAGAAGAGATGGAGTCACGAATATGCAGAGTTTGCAGACTATTCCTGAAGAATGCAGTCCAAATAATCATGAATCCAATAATAGCCAGGTTATATGGCAAGACAACATTGATCCTGATAATATGACTTATGAGGAACTACTGGACCTGGGAGAGGCAATTGGAACTGAAAGCAGGGGTCTTTCCCAAGAACTTATTGATATGCTTCCAACTTCGAAGTACAAATTCGGTAGCTTATTCAAAAGAAAAAGTTCTGGAAAAAGGTGTGTAATTTGTCAGATGACATATAGAAGAGGTGACCAGCAAATAAAATTGCCATGCAACCATCTTTACCATGGTGAATGCATTACCAAATGGCTTAGCATTAACAAGAAATGTCCAGTTTGCAACGTTGAGGTGTTTGGCGAGGAACCAACACACTAG 738 0.3997 MNDGRQMGLHYVDNGFPYAVNESFTGFYPHVPLNYAYAGSMPDQESVYWSMNMNPYKFGLTGPGSTSYYGCYEVNGNLPRMEINRAEWEYPSVMITEEPASTESPPRRDGVTNMQSLQTIPEECSPNNHESNNSQVIWQDNIDPDNMTYEELLDLGEAIGTESRGLSQELIDMLPTSKYKFGSLFKRKSSGKRCVICQMTYRRGDQQIKLPCNHLYHGECITKWLSINKKCPVCNVEVFGEEPTH* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1265 245 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 156 239 IPR013083 -
Lan8g1265 245 SUPERFAMILY RING/U-box 193 239 - -
Lan8g1265 245 SMART ring_2 194 234 IPR001841 -
Lan8g1265 245 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BIG BROTHER 1 244 - -
Lan8g1265 245 ProSiteProfiles Zinc finger RING-type profile. 194 235 IPR001841 -
Lan8g1265 245 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 244 IPR033276 GO:0004842|GO:0016567|GO:0046621
Lan8g1265 245 Pfam Ring finger domain 193 235 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1265 Lan-Chr8 19043781 19050003 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1265 10 245 C3H Transcription Factor Family AT3G63530 54.583 2.88e-95 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1265 K19045 - gmx:100785290 441.039