Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1263 ATGACAGATCCTAATTCCAAATTATTCGATGGGTGGTTCAACTTCATGCCCCTTCAACCTTATGATGCTCATGATCAATCCAACTACTTTTTCTCATCTTCTTCATTATACCCTCTTGTTTACTCATCAAACAACAGATTTGAAATTCAATCTGAAGCTTCGCCCTCTAATAATATTGCATGTCCTCCTTCCCCTCCTCTCATAGAAGCACTTCCTCTCATAAACAAATTAAGCCTCACAAAGCAGCACCACCAAAATATTGAACCTTCAAACCGTAATAGTGTTTCAGAAGAGGACAAATATCTTGAGAATCTTTTCACTGGTACTGAATATGATGGAACAGCTGATACTGTTTCCCTTAACATAGGGCTTCCAAGAATGGATACTTCTTCTTCTGATCTGGGGTCAAGGAAGGTCTCAACTTGTGTAGAAAAAGAGAGAGTGAATATGATTTCTGCACACCCTTTTGATGGATTGAACAAGGGTCAGTATTGGATTCCCACCCCTTCTCAGATTCTCATTGGTCCTACACAGTTCTCATGTCATGTCTGCTCTAAAACTTTCAACAGATACAACAATCTTCAGATGCATATGTGGGGGCATGGATCTCAATACAGAAAGGGGTCTGATTCTCTAAAAGGAACACAACCAACAGCTATGTTAAGGCTTCCATGTTTTTGTTGTGCACCAGATTGCAAGCACAACATTGACCACCCAAGAGCAAAGCCACTCAAGGATTTTAGAACCCTTCAAACTCACTATAAGAGAAAGCATGGAGTAAAACCCTATACATGCATAAAATGTGGCAAAGCTTTTGCAGTAAAAGGTGATTGGAGGACACATGAGAAGAACTGTGGCAAAATATGGTATTGTTTATGTGGGTCTGATTTCAAACATAAAAGGTCTCTAAAAGATCACATAAAAGCATTTGGCTTTGGCCATGGAGTTTTTGGTATGGATTGCATGCAAGAAGATGATGAACCAGCTTCTGAGATTGAACATGATGAGGAGAGTTCATTGTGA 1023 0.3959 MTDPNSKLFDGWFNFMPLQPYDAHDQSNYFFSSSSLYPLVYSSNNRFEIQSEASPSNNIACPPSPPLIEALPLINKLSLTKQHHQNIEPSNRNSVSEEDKYLENLFTGTEYDGTADTVSLNIGLPRMDTSSSDLGSRKVSTCVEKERVNMISAHPFDGLNKGQYWIPTPSQILIGPTQFSCHVCSKTFNRYNNLQMHMWGHGSQYRKGSDSLKGTQPTAMLRLPCFCCAPDCKHNIDHPRAKPLKDFRTLQTHYKRKHGVKPYTCIKCGKAFAVKGDWRTHEKNCGKIWYCLCGSDFKHKRSLKDHIKAFGFGHGVFGMDCMQEDDEPASEIEHDEESSL* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1263 340 Gene3D Classic Zinc Finger 178 201 - -
Lan8g1263 340 SUPERFAMILY beta-beta-alpha zinc fingers 172 201 IPR036236 -
Lan8g1263 340 PANTHER ZINC FINGER PROTEIN WIP2-LIKE 1 335 - -
Lan8g1263 340 ProSiteProfiles Zinc finger C2H2 type domain profile. 263 283 IPR013087 -
Lan8g1263 340 SMART c2h2final6 179 201 IPR013087 -
Lan8g1263 340 SMART c2h2final6 263 283 IPR013087 -
Lan8g1263 340 ProSitePatterns Zinc finger C2H2 type domain signature. 181 201 IPR013087 -
Lan8g1263 340 Gene3D Classic Zinc Finger 241 311 - -
Lan8g1263 340 Pfam Zinc finger, C2H2 type 179 198 IPR013087 -
Lan8g1263 340 ProSiteProfiles Zinc finger C2H2 type domain profile. 179 206 IPR013087 -
Lan8g1263 340 PANTHER ZINC FINGER PROTEIN WIP2 1 335 IPR043584 GO:0003700|GO:0010468
Lan8g1263 340 SUPERFAMILY beta-beta-alpha zinc fingers 248 283 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1263 Lan-Chr8 19010687 19013253 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1263 159 333 C2H2 Transcription Factor Family AT3G57670 84.571 7.84e-115 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan8g1263 zf-C2H2 0.001 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1263 - - gmx:100794446 500.36