Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1261 ATGTCTAGAATATGTGTCAAAAATCTCCCTAAATATGCTCTCGAAGACCGTCTCCGAGATTTTTTTTCTCAAAAGGGAGGAGAAATCACTGACATTAAACTTATGCGAACCAAAGAGGGTAAGAGTCGTCAATTTGCTTTTATTGGATTTCGTACTGAACATGAAGCTCAACAAGCTATTCTTTATTTCAATAAATCTTACTTTGACACTTGTAGAATTACCTGTGAGGTGGCTCGAAAATTCGGGGATGCTGAGCTTCCTCGTCCGTGGAGTCGACATTCATCTAAGAAAGACAGTAAAGTAGTTACTGCAGAACAGGATGCTACGAAAAAGACGAAAAATGCGGCTGGAGGTAAAGGACGAGGAGATAATGCTAAGGACAATGTTGATATTGAGGATGACCCGGAGCTTCAAGAATTTCTTCAGGTTATGCAGCCTCGGGTTAAGTCTAAAATGTGGGCGAATGATACTTCGATTGTAACTGAGGTTGCTGAGAAGAAGCAGCCAATAGCGGATAAGGGTAGTAAAGATAATACATCGGTTTCAATCCAAGGGGAAGACATTGTTGAAAGTGACTCAGTAGTGGATGATGATGATGATGACATTGAAAATATTCGTGAACCCGAGAAGATACCTGAGTTTGGACATGATGGACTCTTGTCTGATACGGACTATTTCAAGAGCAGAGTGACAACAGAGTGGTCTGATTCTGATAGTGACGATGATGAAGACGATGCTGAAGACAGCGATGGTCATGATGATGGAAATGAAGAAAATGGTGATAAAAAATCTTTAGAGAAAACTGGAAGAAATGGTATTAAAAAGTTAGATCTAGAAGAGGGCCAAGAAGATGCTATTCCGAAGGATGTTTCTCACGAAAAGGCTCTGATGGATGCGCCTGAGCAAGGAGGCCAATCATCAAATTCACAAGATGAGAAAAAAGTCGTCGAGTCCTGCCGACTGTTTGTCCGTAATCTGCCATACACCACCACTGAAGAGGAACTGGAGGAGCAATTCAGCAAGTTTGGCAGTGTCTCACAGGTTCACCTAGTCGTTGATAAAGATACTAAGCGATCCAAAGGAATAGCATATATTCTGTACTCAGATCCTGAATCAGCAGCCAGGGCTCTAGAAGAGTTAGATAATTCAATCTTTCAAGGAAGATTGTTGCATGTTATGCCAGCCATACAAAGACCTTCAGACAACAAAGAGAACAATGTTTCCAAGGACCAACAGTCTAAATCTCTCAAACAACGGAGAGTAGAGGAAAGGAAAGCGGCTGAAGCTAGTGGAGATACAAGAGCCTGGAATAGTCTGTTCATGCGCCCTGATACAGTTGTGGAAAACATTGCTCTGAAATATGGTGTCAGTAAAAGTGATTTACTTGACCGTGAAGCTGATGATCTTGCCGTACGTATTGCTCTGGGAGAAACTCAAGTGATAGCAGAGACAAAAAATTCATTTAAAAATGCTGGAGTGAATGTGGAAGCTCTGGAGGAACTTACCAATGGTAAAGTTGATGGCGTAAAAAGAAGTAACCACGTGGTTTTAGTGAAGAACTTGCCCTATGGTTCTACAGAAAGTGAACTTGTGAAGATGTTTGGGAAATTCGGTAGTTTGGATAAAATCATTCTCCCTCCGACAAAGACTTTAGCCCTGGTTGTTTTCCTTGAACCAGCTGAAGCGCGAGCAGCTTTTAGAGGATTATCTTACAAGCGTTACAAGGATGCGCCATTATATTTGGAGTGGGCTCCTTCCAATGTTCTTATCCCAAATTCAACATCTAAAAACAATGGAATGGATGGTGCAATTGGTGAAAATGACGCCAAGCGACAGATATTGGAGCAACATGTAGAAAGAATATCAGATGTGGACATCGATCCGGACAGAGTGGAGGCTCGGTCCCTGTTTGTCAAGAACCTCAATTTCAAAACAACAGATGAGGGTTTGAAGAGCCATTTTAATGAACACGTGAAAGGGGGAAAAATTTTGAGTGTCAAGGTAAAGAAGCATTTGAAAAATGGAAAAAATGTTTCTATGGGGTTTGGATTTGCTGAATTTGACTCCATGGAGACTGCCAGAAATGTTTGCAGAGATTTACAGGGGACTGTTTTGGATGGGCATGCTCTTATTTTACAACTATGTCAAGTCAAGAAGGACGGGGATGTGCGAAAGACAGTTGACAAGGATAAGAGCTCAACAAAGTTGCTTGTAAGAAATGTTGCTTTTGAGGCAACAGAGAAGGATCTGAGACAGTTGTTTACTCCATTTGGTCAGATTAAAAGCTTAAGGTTGCCAATGAAGTTTGGAAATCATAGAGGTTTTGCCTTTGTGGAGTATGTTACTCAGCAAGAGGCACAGAATGCACTTAAAGCACTTTCAAGTACCCATTTGTATGGCAGGCATCTGGTGATCGAGAGAGCGAAAGAAGGTGAGAGTTTGGAAGAACTGCGGGCGAGAACAGCTGCTCAATTTAGTGATGAACAAAATGGATTTCAAAATTCTACGAAGAAAAGGAAGCACGTGGCTATATTAGATGAAAGAAAGATGAAGTTTGAAAGGTTTGATGATTAG 2574 0.4126 MSRICVKNLPKYALEDRLRDFFSQKGGEITDIKLMRTKEGKSRQFAFIGFRTEHEAQQAILYFNKSYFDTCRITCEVARKFGDAELPRPWSRHSSKKDSKVVTAEQDATKKTKNAAGGKGRGDNAKDNVDIEDDPELQEFLQVMQPRVKSKMWANDTSIVTEVAEKKQPIADKGSKDNTSVSIQGEDIVESDSVVDDDDDDIENIREPEKIPEFGHDGLLSDTDYFKSRVTTEWSDSDSDDDEDDAEDSDGHDDGNEENGDKKSLEKTGRNGIKKLDLEEGQEDAIPKDVSHEKALMDAPEQGGQSSNSQDEKKVVESCRLFVRNLPYTTTEEELEEQFSKFGSVSQVHLVVDKDTKRSKGIAYILYSDPESAARALEELDNSIFQGRLLHVMPAIQRPSDNKENNVSKDQQSKSLKQRRVEERKAAEASGDTRAWNSLFMRPDTVVENIALKYGVSKSDLLDREADDLAVRIALGETQVIAETKNSFKNAGVNVEALEELTNGKVDGVKRSNHVVLVKNLPYGSTESELVKMFGKFGSLDKIILPPTKTLALVVFLEPAEARAAFRGLSYKRYKDAPLYLEWAPSNVLIPNSTSKNNGMDGAIGENDAKRQILEQHVERISDVDIDPDRVEARSLFVKNLNFKTTDEGLKSHFNEHVKGGKILSVKVKKHLKNGKNVSMGFGFAEFDSMETARNVCRDLQGTVLDGHALILQLCQVKKDGDVRKTVDKDKSSTKLLVRNVAFEATEKDLRQLFTPFGQIKSLRLPMKFGNHRGFAFVEYVTQQEAQNALKALSSTHLYGRHLVIERAKEGESLEELRARTAAQFSDEQNGFQNSTKKRKHVAILDERKMKFERFDD* 858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1261 857 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 80 IPR000504 GO:0003723
Lan8g1261 857 CDD RRM3_RBM19_RRM2_MRD1 320 393 - -
Lan8g1261 857 CDD RRM5_RBM19_like 634 715 IPR034423 -
Lan8g1261 857 SUPERFAMILY RNA-binding domain, RBD 511 602 IPR035979 GO:0003676
Lan8g1261 857 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 736 803 IPR000504 GO:0003723
Lan8g1261 857 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 516 578 IPR000504 GO:0003723
Lan8g1261 857 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 636 710 IPR000504 GO:0003723
Lan8g1261 857 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 73 IPR000504 GO:0003723
Lan8g1261 857 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 321 391 IPR000504 GO:0003723
Lan8g1261 857 MobiDBLite consensus disorder prediction 255 286 - -
Lan8g1261 857 MobiDBLite consensus disorder prediction 86 117 - -
Lan8g1261 857 SUPERFAMILY RNA-binding domain, RBD 3 89 IPR035979 GO:0003676
Lan8g1261 857 Gene3D - 1 130 IPR012677 -
Lan8g1261 857 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 634 717 IPR000504 GO:0003723
Lan8g1261 857 Gene3D - 231 411 IPR012677 -
Lan8g1261 857 CDD RRM6_RBM19_RRM5_MRD1 734 808 - -
Lan8g1261 857 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 836 - -
Lan8g1261 857 MobiDBLite consensus disorder prediction 236 254 - -
Lan8g1261 857 Gene3D - 631 723 IPR012677 -
Lan8g1261 857 MobiDBLite consensus disorder prediction 86 130 - -
Lan8g1261 857 Gene3D - 507 607 IPR012677 -
Lan8g1261 857 Gene3D - 724 836 IPR012677 -
Lan8g1261 857 MobiDBLite consensus disorder prediction 190 204 - -
Lan8g1261 857 SUPERFAMILY RNA-binding domain, RBD 307 407 IPR035979 GO:0003676
Lan8g1261 857 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 514 586 IPR000504 GO:0003723
Lan8g1261 857 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 734 810 IPR000504 GO:0003723
Lan8g1261 857 SUPERFAMILY RNA-binding domain, RBD 620 720 IPR035979 GO:0003676
Lan8g1261 857 MobiDBLite consensus disorder prediction 205 235 - -
Lan8g1261 857 PANTHER RNA-BINDING PROTEIN 19-RELATED 2 836 - -
Lan8g1261 857 CDD RRM1_MRD1 2 78 - -
Lan8g1261 857 CDD RRM4_RBM19_RRM3_MRD1 514 585 - -
Lan8g1261 857 MobiDBLite consensus disorder prediction 168 286 - -
Lan8g1261 857 MobiDBLite consensus disorder prediction 403 429 - -
Lan8g1261 857 MobiDBLite consensus disorder prediction 397 429 - -
Lan8g1261 857 SMART rrm2_1 320 393 IPR003954 GO:0003676
Lan8g1261 857 SMART rrm2_1 3 76 IPR003954 GO:0003676
Lan8g1261 857 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 319 397 IPR000504 GO:0003723
Lan8g1261 857 SUPERFAMILY RNA-binding domain, RBD 730 812 IPR035979 GO:0003676
Lan8g1261 857 SMART rrm1_1 515 582 IPR000504 GO:0003723
Lan8g1261 857 SMART rrm1_1 320 393 IPR000504 GO:0003723
Lan8g1261 857 SMART rrm1_1 3 76 IPR000504 GO:0003723
Lan8g1261 857 SMART rrm1_1 635 713 IPR000504 GO:0003723
Lan8g1261 857 SMART rrm1_1 735 806 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1261 Lan-Chr8 18979158 19008556 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1261 627 826 Eukaryotic Initiation Factors Gene Family AT1G49760 28.505 2.99e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1261 K14787 - gmx:100796243 1157.13