Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1250 ATGGAACTTGATTTGAGCTTAGGAGACTCTTCAAGGTCTTGTGTGTTCATGGAAAAGTCACATGAAGCTTCTAATCAATTTGGATTTGGCTTCAACACCACTACCTTATCAATTGGTCAAGTTACAACTAAACAAAGTGATCAACACCAACATGAAGAAACAACAAAGGAAAAACATAAACACAATAGTCACTTAGAAGATCAAGAAGCTGCAAATGAGTACCATATTAGTACTTCTCATAAAGCCGATAATAACACATCACTTTTGCAGCTTGATTTTCTTTCTCATACACCATTTGTTGCTCCTATTAACGCACTTCCCCTTCAATCTTTCCCATGGAATCCACCACCTTTTGAAAACGCTGTTGGGAGTTGTCCAAGAGGTTTGGACATGAACATGCTGCCGGTGGCGGTGGCGGTGGCGGTGGAGGATGAGGCGGAGGAAGTGGCGGGGTTGTCTTCATCATCTCCGAACAGCACAACATCATCATTCCAAAGGGGTAGTTCTTCAAGAGCAAGTGATGAAGATGAGAGTGGTGGAAGCACTAGGAAGAAGCTAAGGCTATCCAAGGAGCAATCTAATTTCCTTGAAGAAAGCTTCAAAGAGCATAACATTCTTAATCCAAAGCAAAAACTTGGTCTTGCAAAACAACTCCATCTTCGCCCTCGCCAAGTGGAAGTGTGGTTTCAAAACAGAAGAGCAAGGACCAAATTGAAGCAAACAGAGGTAGACTGTGAATACTTGAAGAAGTGCTGTGAGACACTGAAGGAAGAGAATAGAAGGCTTCATAAGGAGCTTCAAGAATTGAGAACCTTGAAAACTTCAAACACATTCTCCATGCATTTACCAGCCACTACCTTGACAATGTGCCCATCTTGTGAAAATGTTTCCACCAATTCAAATTCCACTACCAATAATGAACCAACAACCTCAAAATTCCAACATGGTAAACCAAGGTTTTAA 963 0.4133 MELDLSLGDSSRSCVFMEKSHEASNQFGFGFNTTTLSIGQVTTKQSDQHQHEETTKEKHKHNSHLEDQEAANEYHISTSHKADNNTSLLQLDFLSHTPFVAPINALPLQSFPWNPPPFENAVGSCPRGLDMNMLPVAVAVAVEDEAEEVAGLSSSSPNSTTSSFQRGSSSRASDEDESGGSTRKKLRLSKEQSNFLEESFKEHNILNPKQKLGLAKQLHLRPRQVEVWFQNRRARTKLKQTEVDCEYLKKCCETLKEENRRLHKELQELRTLKTSNTFSMHLPATTLTMCPSCENVSTNSNSTTNNEPTTSKFQHGKPRF* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1250 320 Gene3D - 187 237 - -
Lan8g1250 320 MobiDBLite consensus disorder prediction 46 63 - -
Lan8g1250 320 SMART HOX_1 181 243 IPR001356 GO:0003677
Lan8g1250 320 MobiDBLite consensus disorder prediction 149 188 - -
Lan8g1250 320 PANTHER - 1 313 - -
Lan8g1250 320 MobiDBLite consensus disorder prediction 151 169 - -
Lan8g1250 320 Coils Coil 252 275 - -
Lan8g1250 320 SUPERFAMILY Homeodomain-like 160 240 IPR009057 -
Lan8g1250 320 MobiDBLite consensus disorder prediction 296 313 - -
Lan8g1250 320 MobiDBLite consensus disorder prediction 170 188 - -
Lan8g1250 320 MobiDBLite consensus disorder prediction 296 320 - -
Lan8g1250 320 Pfam Homeobox associated leucine zipper 239 272 IPR003106 GO:0006355|GO:0043565
Lan8g1250 320 SMART halz 239 282 IPR003106 GO:0006355|GO:0043565
Lan8g1250 320 Pfam Homeodomain 183 237 IPR001356 GO:0003677
Lan8g1250 320 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 1 313 - -
Lan8g1250 320 CDD homeodomain 183 240 IPR001356 GO:0003677
Lan8g1250 320 MobiDBLite consensus disorder prediction 40 63 - -
Lan8g1250 320 ProSitePatterns 'Homeobox' domain signature. 214 237 IPR017970 GO:0000981|GO:0006355
Lan8g1250 320 ProSiteProfiles 'Homeobox' domain profile. 179 239 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1250 Lan-Chr8 18796382 18799681 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1250 127 294 Homeobox Transcription Factor Family AT3G60390 58.416 2.04e-65 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lan8g1250 Homeodomain 1.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1250 K09338 - gmx:100778742 302.367