Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1249 ATGATGGAGCTTGATTTGAATAGAGAGCCATTGGACACGATTAGTACTACTTCAGAGATTGAACTGGATTCTTTATTGGATGAACTAGAATCTGACAATGGACCTATATATGATCGTATTCGACACCTTGAAGCAGTGACTTTCCGAGCTAGGGAGCGTCACATGTGGCCCCCGGTTCACAATCCGATTCAAATTACCAACTTTACAGCAGATGTCACAACAGCAGCTGATGACTTTCAAGACGAAGAAGGAAGGGAAGAGAACCAGGAAGTTGAAGAAGGAATAGTTGAAAGTGCGAAAGGGCATGAAGGTAAGGGTGCCTATTTAGTAGCTAAAGCGTTGGGTGTTGAAAGAGATGTGGTAGATGGCAGAACCGGGAACTATTTTGATTGCAATATATGCTTGGACACGGCAAGAGATCCTGTTGTGACCTGCTGTGGTCACTTGTTTTGTTGGGCGTGCTTCTATCAGTTGTCGTACGCTTATCCAAATGCAAAGGAATGCCCTGTTTGTAAAGGAGAGGTCACTGATAATGGCATTATTCCAATTTATGGCAATGCTAGCGATGGGAGCAATTCTCAGTTAGAGTTAACTGAAAATGGTTTGAGAGTTCCTCCTCGACCTCGTGCACCTAGAGTTGAGAGTGTTAGGCAGCGACTTATAAGCCAAGGAGCACCTCCTTCTATAATCCGAAATGTTCAGCGGTATAATAACCTCATTGGTGGATTAGGAGAGCGAGTTATGCCAGGTCTCAATAATCCAACTGGAAGAAATAATGTTTTGCCAGCTCAACCTCGCCTGCAGGCAATCAATACTCAACACACTCATTCTCATGCAATTTCAAGGTTATTGATGCAAGGAGCGTCCCTTGAATATGCATTAAACTCTGCATTGAATACCGCTGACAGAATAGTTGACGACCTTGAATCATATATTCATGGTCACCACACAGGAAGGAACACACAGTTAGGTCCTGGTGCTCTTAATAGAGGTTCAACTTTTAGTGTTCCTGCTTCAAGCCTTCCAGGGTTTCGTGCTCAAATTGTTACTGCAACCAATGTCGCAGCTGCAGCTTCTCTTTTAAATAGGAATAATGACACAACTGCTGTTATAGGCCCGAGAATTCAGGCAATCAATGGTAGCTTACAGATTAGGTCGTCTGACCCTTCTTCATCTTACAGTAGAAGAAGAACTGATGCTTCAAGACAAGATTCAAGTGAGCGCAGAAGAAGAAGGTTAAGATGA 1245 0.4329 MMELDLNREPLDTISTTSEIELDSLLDELESDNGPIYDRIRHLEAVTFRARERHMWPPVHNPIQITNFTADVTTAADDFQDEEGREENQEVEEGIVESAKGHEGKGAYLVAKALGVERDVVDGRTGNYFDCNICLDTARDPVVTCCGHLFCWACFYQLSYAYPNAKECPVCKGEVTDNGIIPIYGNASDGSNSQLELTENGLRVPPRPRAPRVESVRQRLISQGAPPSIIRNVQRYNNLIGGLGERVMPGLNNPTGRNNVLPAQPRLQAINTQHTHSHAISRLLMQGASLEYALNSALNTADRIVDDLESYIHGHHTGRNTQLGPGALNRGSTFSVPASSLPGFRAQIVTATNVAAAASLLNRNNDTTAVIGPRIQAINGSLQIRSSDPSSSYSRRRTDASRQDSSERRRRRLR* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1249 414 Pfam Zinc finger, C3HC4 type (RING finger) 130 176 - -
Lan8g1249 414 ProSiteProfiles Zinc finger RING-type profile. 131 172 IPR001841 -
Lan8g1249 414 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 107 201 IPR013083 -
Lan8g1249 414 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 7 392 - -
Lan8g1249 414 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 7 392 IPR045103 GO:0005783|GO:0006511|GO:0061630
Lan8g1249 414 MobiDBLite consensus disorder prediction 383 414 - -
Lan8g1249 414 CDD RING-HC_AtRMA_like 129 173 - -
Lan8g1249 414 SUPERFAMILY RING/U-box 127 178 - -
Lan8g1249 414 SMART ring_2 131 171 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1249 Lan-Chr8 18751846 18754075 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1249 79 358 C3H Transcription Factor Family AT3G58030 31.402 4.02e-32 124