Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1246 ATGGAAAGAAAACAAAGCGAGTTTGATAGAACACACGTAAAGAAAGGACCATGGAGTGTTGAAGAAGATGAGGTACTGTTAAAGCATGTGAACAAGTATGGTCCAAGGGATTGGAGCTCCATTCGAACCAAAGACTTGTTGCATCGAACCGGAAAATCTTGTCGCCTTAGATGGGTTAATAAGCTTAGACCAGATTTGAAGTCTGGGTGTAAGTTTTCAGCAGAGGAGGAGAGAGTGGTGATAGAATTACAAGCAGAATTTGGGAACAAATGGGCCAAAATTGCTACATATTTGGAAGGGAGAACTGATAATGATGTGAAAAACTTCTGGAGCAGCAGGAGGAAAAGGTTGGAGAGGATATTGAAGAAGCCATCACCATCAAAGCCTCAGAAAAACAAAGGAAAAATTCCTCTAAACCTAATACAAGTTGAAGAGGTTCCTGCATGCAGTTCCAATCAGCTAGAGGAAAACTACAATTCTTACCCTGCTTCCTATATACTGAACACTGAGGAGATCAAGATGGTTCACCTACCAGATTTAACAAAACCAAACTACCAAAACCAATATTTGGAAAATGATCTCAATGCAATGGATGTTAAGGCCACCTCATTTCATATGGTACCAGAACCATCATTTGCATATTCATCAGGTTACAATTGCCATCAACTCCCTGAACCACAAATGGACTTTACATTATTCCCAGGGTGCCATGACCTTGCTCCAGAGCCATTTGACCCCAACTTTATTGACATATTTGAGCAGAAAAATTGTTCAGAAAGTGTAAGCAGTCAGAAGTTTGTGACCAAGTTGCCAACTCTTGGATTAGAGGGAAGTTGTCAAAATACAATTCCAAATGGGTTCTTTGAGGAATTCCCTACTGAGATGTTGGAATATTTTGAGCATGTTCCAAACTAA 915 0.4 MERKQSEFDRTHVKKGPWSVEEDEVLLKHVNKYGPRDWSSIRTKDLLHRTGKSCRLRWVNKLRPDLKSGCKFSAEEERVVIELQAEFGNKWAKIATYLEGRTDNDVKNFWSSRRKRLERILKKPSPSKPQKNKGKIPLNLIQVEEVPACSSNQLEENYNSYPASYILNTEEIKMVHLPDLTKPNYQNQYLENDLNAMDVKATSFHMVPEPSFAYSSGYNCHQLPEPQMDFTLFPGCHDLAPEPFDPNFIDIFEQKNCSESVSSQKFVTKLPTLGLEGSCQNTIPNGFFEEFPTEMLEYFEHVPN* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1246 304 Gene3D - 7 68 - -
Lan8g1246 304 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Lan8g1246 304 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Lan8g1246 304 PANTHER TRANSCRIPTION FACTOR DUO1 1 303 - -
Lan8g1246 304 Pfam Myb-like DNA-binding domain 18 68 - -
Lan8g1246 304 SUPERFAMILY Homeodomain-like 13 110 IPR009057 -
Lan8g1246 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 66 IPR017930 -
Lan8g1246 304 ProSiteProfiles Myb-like domain profile. 71 114 IPR001005 -
Lan8g1246 304 SMART sant 68 116 IPR001005 -
Lan8g1246 304 SMART sant 14 64 IPR001005 -
Lan8g1246 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 118 IPR017930 -
Lan8g1246 304 Gene3D - 70 137 - -
Lan8g1246 304 CDD SANT 71 110 IPR001005 -
Lan8g1246 304 CDD SANT 17 62 IPR001005 -
Lan8g1246 304 PANTHER MYB TRANSCRIPTION FACTOR 1 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1246 Lan-Chr8 18727008 18729137 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1246 4 121 MYB Transcription Factor Family AT3G60460 77.119 2.06e-63 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan8g1246 Myb_DNA-bind_6 4e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1246 K09422 - gmx:121173231 389.808