LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lan8g1239	ATGTCGCTAAACATGAAAACCCTAACCCAAGCATTAGCCAAAACCGCCGCAGTTATCGAGAAAACCGTAACAACCACCGTACAAGAAGTCACCGGACCTAAGCCCCTCCAGGACTACGATCTTCTCCACCAGATCGGTTCCGCTGGTCCTGGTCTCGCGTGGAGGCTATACTCCGCCAGAGCGCGTGATCCTTCCCGGAAGCACCAGTACCCTGTCGTTTGCGTTTGGATTTTGGATAAGCGCGCTTTATCGGAGGCGCGAGTGCGTGCTGGTTTGACCAAGGCTGCGGAGGATTCGTTCTTAGATTTGATTCGGACCGATGCGGCGAAATTAGTTAGGTTGAGGCATCCTGGTGTGGTGCATGTGGTGCAGGGGTTGGATGAGAGTAAGAATGCGATGGCTATGGTTACTGAACCGTTGTTTGCTTCGATTGCGAATACGCTTGGGAATTTGGATAATGTTGCTAATGTTCCTAAGGAGCTTAGGGGAATGCAAATGGGACTGTTGGAGGTGAAGCATGGTTTACTACAGATAGCAGAATCATTGGACTTTCTCCACAACCATGCTCATCTTATTCATCGAGCTATATCACCTGAGAATGTTTTTATCACCTTGAGTGGAGCCTGGAAACTCGGTGGATTCGGTTTTGCAATTTCAGCTTCTCAGACATCTGGTGACTCATCTAATTTCCATTATGCTGAATATGACATCGAGGACTCAATTTTGCCTGTTCAACCATCACTTAATTACACTGCTCCTGAGCTGGTGAGGAGCACTGCGTCTTCAGCTGGGCCCTCTTCTGATATTTTCAGTTTTGGATGCCTTGCCTACCATTTAATTGCTCGAAAGCCTCTGTTTGATTGCCATAACAATGTGAAGATGTTCACGAATACCTTGACTTACTTATCAAGTGACGCTTTCTCATCTATCCCATCGGAACTGGTTCCAGACTTGACAAGGATGCTCTCTCCAAATGAGTCTACCAGACCAACAGCGATGGATTTTACAGGCTCGCCATTTTTTCGGAACGACACTAGATTGCGTGCTCTGCGCTTCCTCGATCACATGCTCGAAAGAGATAACATGCAGAAATCCGAGTTCTTAAAAGCATTGTCAGATATGTGGAAAGATTTTGATTCCCGTGTATTGCGTTACAAGGTCCTTCCACCACTTTGTGCAGAACTTAGGAATGTGGTGATACAGCCCATGATTCTACCAATGGTTCTAACTATTGCCGAGTCTCAGGACAAGAATGATTTTGAGCAATCAACACTTCCAGCCCTTGTACCTGTCCTGAACACTGCTTCTGGTGAGACACTGTTACTACTTGTGAAGCATGCTGAGCATATAATAAACAAGACCAGTCAAGAGGATTTAGTTTCACATGTTCTTCCTATGATTATTCGGGCCTATGATGATAATGATGCTCGTTTACAAGAAGAGGTCCTGAAAAAATCTGTGTCCCTTGCCAAAGAACTTGATCCCCATCTGGTGAAACAAGTGGTTTTACCCCGTGTGCATGGCTTAGCACTTAAAACGACAGTTGCTGCGGTTAGAGTCAATGCTTTACTGTGCCTAGGAGACATGATTAACCGGCTTGATAAACATGCTGTCTTGGACATCTTGCACACTATTCAGCGATGTACTGCAGTTGACCGTTCTCCGCCAACTCTTATGTGTACACTAGGGGTTGCAAATTCTATTTATAAGCAGTATGGAGTAGAATTTGTTGCTGAGCATGTTCTTCCATTGATAATGCCCCTCCTGACAGCTCAACAGCTAAACGTTCAGCAGTTTGCGAAATATATGCTCTTCGTCAAGGACATGCTCCAGAAGATAGAAGAGAAGCGAGGAGTAGCTGTGACAGATTCTAGAATCCCAGAGGTAAAAATATCTCGAGCACTTAATGAGCTACAATCTGAAGCCTCCAGGACAAGAAACAGTGCTGTTGCTTCAGCAAAAAACAGCACATGGGATGAAGATTGGGGTCCTACAGCAAAGGGTATTGCCACTTCTGTCCAGAATTCTATTCATACAACCAGTCAATCTGTGCCGGGCAACCCAGTTGGTCAAGTAACATCTTTACAAAACCATGCGCCGTTATCTGGTGTATCTAATCAGCAGACTACCAAGTCATGCCCCTCTGTGGATTTAGAGTGGCCACCTCGTGCACCTGTTGGTGTTACCCCGCAGTATGGTGATGCTGAAAATCATGCAGTAGCAGCAGGAACCTTATCCACATCTAATCTTGAAGATGGTGATCCTTTTGCTGATTGGCCTCCGCGTCCTAGTGGCTCATTATCAGGTGGGTCTGGAAGTTCCATCAATGGTAATTTAGGAACGCCACCAAACAACTTTGGGTTTAACTCAATGACTAGCACTTCAAGGAGTATGGGTCTCCAATCCAACAACATTTGGTCTGTTAATTCCCAAAAAAATTCAGAGCCTGTCAGTTTGAACCTAGGGAATGCTAGTTCAACCACCAGTACCCTGAATGATGGTCTCAAACCTCAGAACTCTCTTGCGTCTCTAAAACAAAGTCACCACTTTCCAGCATCAAATGTTTCATATAATAACGTCAAGTCAACAGATCTTGGATCTATGTTTGCTTCCAACACGAATGAACAGATTGCACCTAAACTCGCACCACCTCCTTCAACGTCAGTGGGTAGAGGACGAGGAAGAGGGAGGGGAGCTGGCTCAACCACTCGGTCCTCTAACACCAAGTCGCACTCTGAGCAACCACCCCTTTTGGATTTGTTGGGGTAG	2769	0.4576	MSLNMKTLTQALAKTAAVIEKTVTTTVQEVTGPKPLQDYDLLHQIGSAGPGLAWRLYSARARDPSRKHQYPVVCVWILDKRALSEARVRAGLTKAAEDSFLDLIRTDAAKLVRLRHPGVVHVVQGLDESKNAMAMVTEPLFASIANTLGNLDNVANVPKELRGMQMGLLEVKHGLLQIAESLDFLHNHAHLIHRAISPENVFITLSGAWKLGGFGFAISASQTSGDSSNFHYAEYDIEDSILPVQPSLNYTAPELVRSTASSAGPSSDIFSFGCLAYHLIARKPLFDCHNNVKMFTNTLTYLSSDAFSSIPSELVPDLTRMLSPNESTRPTAMDFTGSPFFRNDTRLRALRFLDHMLERDNMQKSEFLKALSDMWKDFDSRVLRYKVLPPLCAELRNVVIQPMILPMVLTIAESQDKNDFEQSTLPALVPVLNTASGETLLLLVKHAEHIINKTSQEDLVSHVLPMIIRAYDDNDARLQEEVLKKSVSLAKELDPHLVKQVVLPRVHGLALKTTVAAVRVNALLCLGDMINRLDKHAVLDILHTIQRCTAVDRSPPTLMCTLGVANSIYKQYGVEFVAEHVLPLIMPLLTAQQLNVQQFAKYMLFVKDMLQKIEEKRGVAVTDSRIPEVKISRALNELQSEASRTRNSAVASAKNSTWDEDWGPTAKGIATSVQNSIHTTSQSVPGNPVGQVTSLQNHAPLSGVSNQQTTKSCPSVDLEWPPRAPVGVTPQYGDAENHAVAAGTLSTSNLEDGDPFADWPPRPSGSLSGGSGSSINGNLGTPPNNFGFNSMTSTSRSMGLQSNNIWSVNSQKNSEPVSLNLGNASSTTSTLNDGLKPQNSLASLKQSHHFPASNVSYNNVKSTDLGSMFASNTNEQIAPKLAPPPSTSVGRGRGRGRGAGSTTRSSNTKSHSEQPPLLDLLG*	923

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lan8g1239	922	PANTHER	ARM REPEAT SUPERFAMILY PROTEIN	7	921	-	-
	Lan8g1239	922	MobiDBLite	consensus disorder prediction	766	781	-	-
	Lan8g1239	922	MobiDBLite	consensus disorder prediction	676	695	-	-
	Lan8g1239	922	Gene3D	-	345	618	IPR011989	-
	Lan8g1239	922	ProSiteProfiles	Protein kinase domain profile.	39	341	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lan8g1239	922	CDD	PK_SCY1_like	45	343	-	-
	Lan8g1239	922	PANTHER	SCY1-RELATED S/T PROTEIN KINASE-LIKE	7	921	-	-
	Lan8g1239	922	MobiDBLite	consensus disorder prediction	642	659	-	-
	Lan8g1239	922	SMART	serkin_6	39	341	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lan8g1239	922	MobiDBLite	consensus disorder prediction	701	715	-	-
	Lan8g1239	922	MobiDBLite	consensus disorder prediction	746	781	-	-
	Lan8g1239	922	Gene3D	Transferase(Phosphotransferase) domain 1	148	344	-	-
	Lan8g1239	922	SUPERFAMILY	Protein kinase-like (PK-like)	35	345	IPR011009	-
	Lan8g1239	922	Pfam	Protein kinase domain	104	341	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lan8g1239	922	MobiDBLite	consensus disorder prediction	874	922	-	-
	Lan8g1239	922	MobiDBLite	consensus disorder prediction	642	666	-	-
	Lan8g1239	922	MobiDBLite	consensus disorder prediction	701	731	-	-
	Lan8g1239	922	SUPERFAMILY	ARM repeat	410	600	IPR016024	-
	Lan8g1239	922	MobiDBLite	consensus disorder prediction	899	914	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lan8g1239	Lan-Chr8	18595695	18610570	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lan8g1239	104	346	CBL-interacting serine-threonine protein kinases	AT2G26980	25.506	2.24e-10	62.0

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	SCY1_SCYL2	Lan8g1239		Pkinase	1.3e-23	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lan8g1239	K17541		-	gmx:100796211	1464.9