Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1237 ATGGAGTCCTGCAACTGTATTGAGCCACAATTTCCAGCTGAGGAATTATTGATGAAATATCAATATATCTCTGATTTCTTCATCGCCCTTGCTTATTTCTCAATCCCTCTGGAGCTTATTTACTTCGTTAAGAAATCAGCAGTATTTCCATATAGATGGGTCCTTGTTCAGTTTGGTGCTTTCATAGTTCTATGCGGTGCAACACATCTAATTAATTTATGGACCTTTACGATGCATACAAAAACTGTGGCAATAGTAATGACCATTTCTAAGGTTTTAACTGCTGTGGTATCATGTGCAACTGCCCTTATGCTTGTACATATTATTCCTGATTTATTAAGTGTTAAAACTAGAGAACTATTTTTGAAGAAAAAAGCTGCAGAGCTTGATAGAGAGATGGGCCTGATTCGCACACAGGAAGAAACTGGTCGACATGTAAGGATGCTTACTCATGAGATTAGAAGCACTCTTGATAGACACACGATATTGAAAACGACTCTTGTTGAACTGGGTAGAACTTTGGCACTAGAGGAGTGTGCTTTATGGATGCCTACACGTACTGGGTTGGAGCTTCAACTCTCTTACACATTGCGACAGCAAAACCCAGTTGGCTACACAGTACCGATACATCTTCCTGTGATCAATCAAGTATTTAGTAGCAACCGTGCGGTACCAATTTCACCGAATTGCCCAGTTGCTAGATTACGTCCTCATGGTGGAAAATTCATGCCTGGGGAGGTGGTCGCTGTTCGGGTCCCTCTCCTACATCTTTCTAATTTCCAAATATATGACTGGCCAGAAGTTTCAACAAGAAATTATGCTTTGATGGTCTTGATGCTTCCATCTGATAGTGCCAGACAATGGCATGTACATGAGTTAGAGCTGGTTGAGGTCGTTGCCGATCAGGTAGCTGTTGCTCTTTCACATGCTGCAATCTTAGAAGAGTCAATGAGGGCAAGGGATATGCTTATGGAACAGAATGTTGCACTTGATCTGGCCAGAAGAGAAGCAGAAACTGCAATTCGTGCTCGCAATGATTTCTTGGCTGTTATGAATCACGAGATGAGAACTCCCATGCATGCAATTATTGCACTCTCTTCATTGTTACAGGAAACAGAGCTGACAGCTGAGCAACGTCTGATGGTGGAGACAATATTAAAAAGCAGCAACTTGTTGGCTACTCTCATCAATGATGTTTTGGATCTTTCACGGCTTGAAGATGGAAGTCTTCAACTTGAAGAAGCAACATTTAACCTTCATTCTGTGTTCAGAGAGGTCCTTAACTTGATTAAGCCCATTGCATCTGTCAAAAAGTTGTCGCTCACCTTACAGATAGCTTCAGATCTGCCAACGTATGCCATTGGTGATGAAAAACGTCTCATGCAGACTCTTCTGAATATTGTTGGTAATGCTGTGAAGTTCTCAAAAGAGGGCAGCATTTCCGTCACTGCTTTTGTCGCAAAGCCTGAATCCTTCAAAGATGCTAGAATTCCTGACTTTTTTCCAGTGCCAAGTGATGGCCACTTTTACTTGCGAGTACAGGTAAAAGATTCGGGAGCGGGAATTAATCCACAAGATATCCCGAAGTTATTTACTAAGTTTACACAAAGCCAAACATTAGCAACAAGAAATCCTGCTGGAAGTGGACTTGGCCTAGCAATTTGCAAAAGATTTGTAAATCTCATGGAAGGGCAAATTTGGATTGAAAGTGAAGGTATTGGCAAAGGATGTACTGTCACTTTTATGGTAAAACTTGGAATACCAGACCGAACAAATGAATCTAAACTATCTTTTGCTCCTAAAATTCCGGGAAATCATATATCTACAAACTTTGCTGGGCTCAAGGTTCTCGTCATGGATGATAATGGGGTTAGCAGGTCAGTAACAAAGGGACTTCTTATGCATTTAGGATGTGAAGTGACAACTGTAAGCTCAAGTGAAGAGTGTCTTCGTGTTGTTTCTCTTGAGCACAAGGTGGTTTTTATGGATGTGTGTACTGGATTGGATGGTTATGAACTAGCGGTACGTATACACGAGAAGTTTACGAAACGCCTCGATAGGCCACTAATAGTAGCTCTTACAGGAAACACCAACAAGGTGACTAAAGAGAACTGCATGAGGGTTGGTATGAATGGCCTTATACTGAAACCAGTTTCAGTTGACAAGATGAGGGGTGTGTTATCAGAACTCCTAGAACGTCGAGTTCTATTTGAAACCATTGAATAA 2226 0.4128 MESCNCIEPQFPAEELLMKYQYISDFFIALAYFSIPLELIYFVKKSAVFPYRWVLVQFGAFIVLCGATHLINLWTFTMHTKTVAIVMTISKVLTAVVSCATALMLVHIIPDLLSVKTRELFLKKKAAELDREMGLIRTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYTLRQQNPVGYTVPIHLPVINQVFSSNRAVPISPNCPVARLRPHGGKFMPGEVVAVRVPLLHLSNFQIYDWPEVSTRNYALMVLMLPSDSARQWHVHELELVEVVADQVAVALSHAAILEESMRARDMLMEQNVALDLARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETELTAEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLEEATFNLHSVFREVLNLIKPIASVKKLSLTLQIASDLPTYAIGDEKRLMQTLLNIVGNAVKFSKEGSISVTAFVAKPESFKDARIPDFFPVPSDGHFYLRVQVKDSGAGINPQDIPKLFTKFTQSQTLATRNPAGSGLGLAICKRFVNLMEGQIWIESEGIGKGCTVTFMVKLGIPDRTNESKLSFAPKIPGNHISTNFAGLKVLVMDDNGVSRSVTKGLLMHLGCEVTTVSSSEECLRVVSLEHKVVFMDVCTGLDGYELAVRIHEKFTKRLDRPLIVALTGNTNKVTKENCMRVGMNGLILKPVSVDKMRGVLSELLERRVLFETIE* 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1237 741 SMART gaf_1 158 317 IPR003018 GO:0005515
Lan8g1237 741 SUPERFAMILY CheY-like 610 733 IPR011006 -
Lan8g1237 741 Pfam Response regulator receiver domain 616 724 IPR001789 GO:0000160
Lan8g1237 741 SMART HisKA_10 343 408 IPR003661 GO:0000155|GO:0007165
Lan8g1237 741 ProSiteProfiles Histidine kinase domain profile. 350 587 IPR005467 -
Lan8g1237 741 Pfam GAF domain 158 307 IPR003018 GO:0005515
Lan8g1237 741 SMART REC_2 614 727 IPR001789 GO:0000160
Lan8g1237 741 PRINTS Bacterial sensor protein C-terminal signature 511 525 IPR004358 GO:0016310|GO:0016772
Lan8g1237 741 PRINTS Bacterial sensor protein C-terminal signature 529 539 IPR004358 GO:0016310|GO:0016772
Lan8g1237 741 PRINTS Bacterial sensor protein C-terminal signature 546 564 IPR004358 GO:0016310|GO:0016772
Lan8g1237 741 SUPERFAMILY GAF domain-like 161 310 - -
Lan8g1237 741 Gene3D - 608 740 - -
Lan8g1237 741 CDD REC_ETR-like 614 727 - -
Lan8g1237 741 ProSiteProfiles Response regulatory domain profile. 615 731 IPR001789 GO:0000160
Lan8g1237 741 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 455 585 IPR003594 -
Lan8g1237 741 PIRSF Ethylen_sen_hybr_HK 1 738 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Lan8g1237 741 Pfam His Kinase A (phospho-acceptor) domain 344 408 IPR003661 GO:0000155|GO:0007165
Lan8g1237 741 Gene3D - 408 592 IPR036890 -
Lan8g1237 741 CDD HisKA 341 404 IPR003661 GO:0000155|GO:0007165
Lan8g1237 741 Gene3D - 136 308 IPR029016 -
Lan8g1237 741 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 329 409 IPR036097 GO:0000155|GO:0007165
Lan8g1237 741 Gene3D - 309 407 - -
Lan8g1237 741 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 2 737 - -
Lan8g1237 741 SMART HKATPase_4 455 587 IPR003594 -
Lan8g1237 741 PANTHER ETHYLENE RECEPTOR 1-LIKE 2 737 - -
Lan8g1237 741 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 397 586 IPR036890 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1237 Lan-Chr8 18564620 18570162 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1237 1 738 Miscellaneous Gene Families AT1G66340 83.108 0.0 1254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lan8g1237 GAF 1.8e-13 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1237 K14509 - gmx:100795340 1329.69