Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1232 ATGAAGGGTGGAAAATCTAAAACCGAAACCAAAAGAGCCGATCCCAAGCTTTCTGTGAATAAGAAAGGTGCAGGTGCTGCAAAACCAGCAAGGAAACCAGCTAAGGGAAAAGCCGCTAAAGACCCTAACAAACCTAAGAGGCCTGCTAGTGCCTTCTTTGTTTTCATGGAGGAGTTTAGGAAGCAGTTCAACAAAGAAAATCCTGACAACAAAGCTGTGTCTGCTGTTGGCAAGGCTGCTGGAGCAAAATGGAAGTCCCTGTCCGAAGCTGAGAAAGCACCTTATGTGGCGAAGGCAGAGAAACGGAAGGTGGAGTATGAGAAGAACATGAGAGCCTATAACAAAAAACAGGCTGAAGGTCCTGCTGCCGCAGATGAAGAAGAGTCTGAGAAATCAATTTCAGAGGTGAATGATGAGGATGATGGAGATGATGATGGAAGTGACGAGGAGGATGATGATGACGATGATGATGATGAGTAG 480 0.4583 MKGGKSKTETKRADPKLSVNKKGAGAAKPARKPAKGKAAKDPNKPKRPASAFFVFMEEFRKQFNKENPDNKAVSAVGKAAGAKWKSLSEAEKAPYVAKAEKRKVEYEKNMRAYNKKQAEGPAAADEEESEKSISEVNDEDDGDDDGSDEEDDDDDDDDE* 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1232 159 PANTHER HIGH MOBILITY GROUP B PROTEIN 2-RELATED 1 153 - -
Lan8g1232 159 MobiDBLite consensus disorder prediction 81 159 - -
Lan8g1232 159 Coils Coil 96 116 - -
Lan8g1232 159 MobiDBLite consensus disorder prediction 131 159 - -
Lan8g1232 159 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 45 114 IPR009071 -
Lan8g1232 159 MobiDBLite consensus disorder prediction 1 18 - -
Lan8g1232 159 Gene3D High mobility group box domain 29 140 IPR036910 -
Lan8g1232 159 Pfam HMG (high mobility group) box 45 114 IPR009071 -
Lan8g1232 159 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 1 153 IPR031061 -
Lan8g1232 159 SUPERFAMILY HMG-box 33 122 IPR036910 -
Lan8g1232 159 CDD HMGB-UBF_HMG-box 45 111 - -
Lan8g1232 159 MobiDBLite consensus disorder prediction 1 49 - -
Lan8g1232 159 MobiDBLite consensus disorder prediction 94 130 - -
Lan8g1232 159 SMART hmgende2 44 115 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1232 Lan-Chr8 18512205 18514227 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Lan8g1232 HMG_box 1.9e-24 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1232 K25507 - lang:109352139 219.164