Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1225 ATGGCGGATCAGGGCTTCAATGAAGGCTCCAGTTCTGGCAATATTTCTGCCGAGTCTTCGGATTCTACTCTTCAGCTCAATATCAAAACTCTAGATTCCCGCATGTATAGTTTTCAAGTGGACACAAATATGTCTGTTTCATCATTCAAAGAGAAAATTGCCAATGAAATTGGTGTTCCAGTTAACCAGCAAAGACTGATATTTAGAGGAAAAGTATTAAAGGATGAGCACATTCTTTCTGAATATCATCTGGAAAATGGGCATACACTGCATTTAGTTGAAAGGCAACCAAATCAGTCACATGTTTCTGGTACGAGTTCTGCTGAGCCAACTGTTACAAATGGTAACCAAGGAAATGATGCCGGCTCCACCGCTCCTCGTACTCGTGTTGGACATATTTCACACAGTGTTGTTCTCGGCACTATTAATGTGGGGGAACAAGGTGAAGGGATGGTTCCCGACCTTAGTGGGGTTATTGGGGCAGTCTTGAATTCTATTGGAATCGGTGGCCAGAGCAGAAATAGTGTTTCTAATGCTACACAAACTTCAGCTCCATCAGGGATTGAAACTGACGGAATACATGCTGGAAATCAAAATCTAGCAGGAAATCAAGCACAGTCTGGACAGACATTTCATGGTCAGGCATTCCATTCTCTGCCTCAAGTTGTTCAGATTCCTGTCCCTGCAGGGGCCATACCCATTCCTTCACTTAATCCAATCCCTCATTCGTTGAACACGCTGTCTGAGTTTATAAATAGCATGGAAAATACACTATCACAAAATGGTCATCTGCCAAATCTGTCTTCAACTAACTCTGGAGATCAACGAGTAGAATTGCCAACCAATGCACAAGGGTTGCCGATGCTTGAAGCTTTAAGCACCATCTTGCATCGCACGGAACAATTGCTTAGTAATCACACTGTTGCTGCGCTATCTCATATTGCAGGACACTTGGAGCGGGAGGGAACTTCTTCTGATCTAAGTATACGGGGTCAAATTCAGTCAGAATCAGTGCAAACTGGAATTGCTATGCAGCATTTAGGTGCACTGCTTCTTGAGCTTGGCCGAACAATGTTGACACTGCGTATGGGGCAGTCTTATGCAGAATCTGTTGTTAATGCTGGACCCGCAGTTTATATTTCTCCATCAGGACCAAATCCTATAATGGTGCAGCCCTTTCCACTTCAGACAAGATCCCTCTTTAGTGGTCCTGTTCCTTCAACTCCTCCAACATTTGGCGCTGTTGGTATTGGAAGTGTTCCTAGGAATGTAAACATTCATATACATGCTGGTACCTCTCTTGCACCAATTGTTTCATCAATTGGTTCTAGGCCAAATAACGGGGAAGGGACAAGAGGTGAACACCCTAGTGAGCCTGGCTCTGGTGTTGGAGTTGCTAGTGGAACACAAACCGGGTTTGGTGTTTCTACTTCACAGCCACCTTCTGATTCAACTCCATTATCATCAGTTTTAGCTGGAATCAATTCTCACCTTAGAGACTTTGTTGGTAATATGCAAGGAGATAACACAGTTCTGTCAGGTCAAACAGAATCAACTAGTCGAGACTTGTCTGCTGGTTCTGATTCTAGACCTGCACAGGGAAACGAACAGCGAGATACTACTGAAATGAATAGCTTCAGGGATGCTAATCTATCCTCAGTTGATTGTACTTCAGAAAGTGGTGTACAGAAGCCCCAAACAGAGACTGTCCAAAACTGTAGTAGAGGCGAGAGAGATGTTTCAGTCGATAAATTTGTTTCTGATCAAGGTTGTTCAAGTGGAGAAACAATAGCAAAATCAGAAAATGTACAAGGTGGTCCATCTGTAAGTGAAGAACGAGGTGTAACGGAAAGTGCCAAAGCTGCTCCATTAGGATTGGGTATGAGTGGTCTGCAGCTTAAGAAGCGAACTCGACCTCAACCTAGTGTAAGCAAAGGTGCTGGTGAAGGATCATCTGGATCTTCTTCCAATCAACGTCAGCAAAATAGAACAGATGGTCAACGTATATTGCAAACTCTTGCCAGTCATGGATCTACTGTGACTTTGAGAAATCCCAATGGGGCATCCCAGCAGCCCTTGCCCTCTGGTGATAGCCAGAATGACATGACCAGTTTAATGTCTCAGGTTTTGCATAGCCCTGCTATTAGTGGTTTGTTGTCAGGTGTTTCACAGCAAACTGGAGTTGACTCACCTGATGGCTTGAGGAATATGTTGGAACAGTTCACACAGAACCCACAGATGATGAACACAGTCAATCAAATTGCTGAACAGGTTGGCAGTGAGGATATTGGGAATATGTTTGCTGGAATGGAAAGAGGGCAAGGAGGTGGTATTGACTTGTCAAGGATGTTTCAACAGATGATGCCAATTGTATCTCGAGTCCTTGGTGGGGGAACTCCTCCCTCACTATTCTCTGCTGCAGAATCACAGCCCCAGGCACCCTACAGAGATTATCATCAAAGTTTACAGCTCGACCTTCAACCAGTAGTACAGAGGATTGAGCATGTGAGTCCACCCACAGATGTTTTCCGGGCTGTAGCTGAAAATGCTGTTCATTTATCCGGCAATGGACGTGCTTCTAATGATCTTCTAGATGAGTTATGCAGCAATGAGCGCCTTGCCTGTGAATATGTGGAGATGTTAAGAAATGATGTAAAACAACGGTTCGAGCGACATTTGTAG 2682 0.4418 MADQGFNEGSSSGNISAESSDSTLQLNIKTLDSRMYSFQVDTNMSVSSFKEKIANEIGVPVNQQRLIFRGKVLKDEHILSEYHLENGHTLHLVERQPNQSHVSGTSSAEPTVTNGNQGNDAGSTAPRTRVGHISHSVVLGTINVGEQGEGMVPDLSGVIGAVLNSIGIGGQSRNSVSNATQTSAPSGIETDGIHAGNQNLAGNQAQSGQTFHGQAFHSLPQVVQIPVPAGAIPIPSLNPIPHSLNTLSEFINSMENTLSQNGHLPNLSSTNSGDQRVELPTNAQGLPMLEALSTILHRTEQLLSNHTVAALSHIAGHLEREGTSSDLSIRGQIQSESVQTGIAMQHLGALLLELGRTMLTLRMGQSYAESVVNAGPAVYISPSGPNPIMVQPFPLQTRSLFSGPVPSTPPTFGAVGIGSVPRNVNIHIHAGTSLAPIVSSIGSRPNNGEGTRGEHPSEPGSGVGVASGTQTGFGVSTSQPPSDSTPLSSVLAGINSHLRDFVGNMQGDNTVLSGQTESTSRDLSAGSDSRPAQGNEQRDTTEMNSFRDANLSSVDCTSESGVQKPQTETVQNCSRGERDVSVDKFVSDQGCSSGETIAKSENVQGGPSVSEERGVTESAKAAPLGLGMSGLQLKKRTRPQPSVSKGAGEGSSGSSSNQRQQNRTDGQRILQTLASHGSTVTLRNPNGASQQPLPSGDSQNDMTSLMSQVLHSPAISGLLSGVSQQTGVDSPDGLRNMLEQFTQNPQMMNTVNQIAEQVGSEDIGNMFAGMERGQGGGIDLSRMFQQMMPIVSRVLGGGTPPSLFSAAESQPQAPYRDYHQSLQLDLQPVVQRIEHVSPPTDVFRAVAENAVHLSGNGRASNDLLDELCSNERLACEYVEMLRNDVKQRFERHL* 894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1225 893 PANTHER OS07G0498800 PROTEIN 7 891 - -
Lan8g1225 893 MobiDBLite consensus disorder prediction 437 489 - -
Lan8g1225 893 MobiDBLite consensus disorder prediction 586 611 - -
Lan8g1225 893 CDD Ubl_ubiquitin_like 26 93 - -
Lan8g1225 893 SUPERFAMILY Ubiquitin-like 17 98 IPR029071 -
Lan8g1225 893 MobiDBLite consensus disorder prediction 170 205 - -
Lan8g1225 893 MobiDBLite consensus disorder prediction 505 664 - -
Lan8g1225 893 Gene3D - 13 108 - -
Lan8g1225 893 PRINTS Ubiquitin signature 34 54 IPR019956 -
Lan8g1225 893 PRINTS Ubiquitin signature 55 75 IPR019956 -
Lan8g1225 893 PRINTS Ubiquitin signature 76 97 IPR019956 -
Lan8g1225 893 ProSiteProfiles Ubiquitin domain profile. 24 99 IPR000626 GO:0005515
Lan8g1225 893 SMART ubq_7 24 95 IPR000626 GO:0005515
Lan8g1225 893 MobiDBLite consensus disorder prediction 98 126 - -
Lan8g1225 893 MobiDBLite consensus disorder prediction 98 124 - -
Lan8g1225 893 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 7 891 - -
Lan8g1225 893 MobiDBLite consensus disorder prediction 505 576 - -
Lan8g1225 893 MobiDBLite consensus disorder prediction 1 21 - -
Lan8g1225 893 MobiDBLite consensus disorder prediction 635 664 - -
Lan8g1225 893 MobiDBLite consensus disorder prediction 677 702 - -
Lan8g1225 893 Pfam Ubiquitin family 26 96 IPR000626 GO:0005515
Lan8g1225 893 MobiDBLite consensus disorder prediction 463 489 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1225 Lan-Chr8 18390426 18402504 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1225 24 95 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 38.889 3.49e-12 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1225 - - lang:109325669 1380.16