Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1215 ATGGGAAGAGGGAGAGTGATTCTGGAAAGAATAGAGAACAAGATTAGTCGCCAAGTAACCTTCTCAAAGCGTAGAAGTGGTTTGATGAAGAAAGCATTCGAGCTTTCTCTGCTATGTGATGCTGAGGTAGCCCTTATCATTTTCTCTGGCCGTGGCAAGCTTTACCAGTATAGCAGCACTGACATCAACAAAATCATAGAGAAGTATCGTCAATGTTGTTACAATAAGTTGCAAGCCTGCAGCGATTTTTTGGAACATGAACCACAGAGCCAATACCATGAGTTCTTGAGATTAAAAGTGAAACATGAATGTCTTGAACGATCACAAAGGAAATTTCAAGGTGAAGAACTAGAGTCACTTACCTTGGAAGAATTACAGAGCCTTGAGAAACAACTTGATAGAACGACCACACTGACTCGACAGCAACACATGAAGAACCTCATTGCACGAGCTGACGAATTACGCGAAAAGGTGCATAGCTTGGAGGAGCTTAACAAACAATTAGAATCCAAGGGAAGAGATGAATTGTCGAGCCTTGTTCCTAACTGTACAAACCAAATTCAGCTGCATTCTGGACAAGCTACTCAGTTTGAATATGGGACAACCTTAAACACATGCGGGTTTCGGCATCAGAAGGAAGCTGCTACAAAAGGAAAAGCAATTGGCACATACATAGAGAGTGTTCAGATCAACCATAACAAAAACAATGGAGGGCTTCTGTGA 723 0.4177 MGRGRVILERIENKISRQVTFSKRRSGLMKKAFELSLLCDAEVALIIFSGRGKLYQYSSTDINKIIEKYRQCCYNKLQACSDFLEHEPQSQYHEFLRLKVKHECLERSQRKFQGEELESLTLEELQSLEKQLDRTTTLTRQQHMKNLIARADELREKVHSLEELNKQLESKGRDELSSLVPNCTNQIQLHSGQATQFEYGTTLNTCGFRHQKEAATKGKAIGTYIESVQINHNKNNGGLL* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1215 240 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 237 - -
Lan8g1215 240 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lan8g1215 240 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Lan8g1215 240 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lan8g1215 240 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Lan8g1215 240 PANTHER MADS BOX PROTEIN 1 237 - -
Lan8g1215 240 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lan8g1215 240 SUPERFAMILY SRF-like 2 78 IPR036879 GO:0003677|GO:0046983
Lan8g1215 240 Pfam K-box region 87 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lan8g1215 240 Coils Coil 144 171 - -
Lan8g1215 240 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lan8g1215 240 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lan8g1215 240 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lan8g1215 240 ProSiteProfiles K-box domain profile. 88 182 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lan8g1215 240 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1215 Lan-Chr8 18020072 18026108 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1215 1 171 MADS-box Gene Family AT2G45650 51.724 6.94e-50 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lan8g1215 K-box 5.2e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1215 K09264 - gmx:100793681 296.204