Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1148 ATGGCTTCCCTTGGCATGTCAGAGATGTTTGGAAACACCATCAACTTGAGTGGTGCAACAAGGTTAGCACCATCACCCTCTAACCCTGCTGCCTTCAAGACTGTGTCTTTTTTCTCCAATTTCAATAACAAGAAGGCACCACCACCTCCAAATAAGAAACCTGCTAGTGATGAGCTTGCAAAGTGGTATGGTCCTGACAGGAGGGTCTTCTTGCCAGCTGGTCTCTTGGACCGATCTGAGATCCCGGCTTACTTGACCGGAGAAGTGGCAGGAGACTATGGTTATGACCCATTTGGTCTTGGAAAAAAGCCCGAGTACTTTGCCAAATATCAGGCAAATGAGTTGATTCATGGCAGATGGGCAATGCTTGGTGCTGCTGGACTCATCATTCCTGAGGCCTTTAACAAATATGGAGCTAACTGTGGTCCTGAGGCTGTTTGGTTCAAGACAGGAGCTCTGCTTCTTGATGGAGCTACGTTGAACTACTTCGGCAAACCCATCCCCATAAATCTTGTTGTAGCTGTCGCCGCAGAGGCTGCTCTTGTGGGTGGTGCAGAGTACTACAGAATTACAAATGTCCTGGATTCGGAAGATGAGCTTCATCCAGGTGGTCCATTCGACCCATTGGGGCTAGCAAAGGATCCAGAGCAAGCTGCAATACTAAAGGTGAAGGAAATTAAGAATGGAAGACTTGCTATGTTTGCAATGCTTGGCTTCTTCCTTCAAGCTTATATCACTGGAGAAGGTCCTGTTGAGAACCTTGCAAAACATCTTAGTGACCCTTTTGGCAATAACTTGCTCACTGTTATTGCTGCCTCTGCTGAGAGGGTTCCAACTCTCTAA 843 0.4709 MASLGMSEMFGNTINLSGATRLAPSPSNPAAFKTVSFFSNFNNKKAPPPPNKKPASDELAKWYGPDRRVFLPAGLLDRSEIPAYLTGEVAGDYGYDPFGLGKKPEYFAKYQANELIHGRWAMLGAAGLIIPEAFNKYGANCGPEAVWFKTGALLLDGATLNYFGKPIPINLVVAVAAEAALVGGAEYYRITNVLDSEDELHPGGPFDPLGLAKDPEQAAILKVKEIKNGRLAMFAMLGFFLQAYITGEGPVENLAKHLSDPFGNNLLTVIAASAERVPTL* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1148 280 SUPERFAMILY Chlorophyll a-b binding protein 61 270 - -
Lan8g1148 280 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 2 280 IPR001344 GO:0009765|GO:0016020
Lan8g1148 280 PANTHER CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC 2 280 - -
Lan8g1148 280 Pfam Chlorophyll A-B binding protein 82 243 IPR022796 -
Lan8g1148 280 Gene3D Chlorophyll a/b binding protein domain 69 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1148 Lan-Chr8 15494455 15497274 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1148 1 280 Chloroplast and Mitochondria Gene Families AT4G10340 77.224 2.11e-145 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1148 K08916 - gmx:100806585 452.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0857 7 7796104 7799634 Lan8g1148 8 15494455 15497274 LSH
Lan8g1148 8 15494455 15497274 Lan13g0808 13 8763808 8769508 LSH