Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1142 ATGGAGGAAAGAGAGATTTTTGGTTCTGAGCATCTGGTTAAGGGTGATGAGGCCAGAGAGAGCTTCCACGTGGCATCGAGAACTGAAGACTTCATGCAGTTTCCCGGCACGGCGGCGGAGCTTCCGGCTGTGGCGGCAGAGATTCCGGCTGTGGCAGCGGAAATTCCTACTGTGGCGCCGGTGTCTTCCGTGGTGACACCAGTAACAGAAGGGAAGAAGAAGAGGGGCAGGCCTAGAAAGTATGGACCGGACGGCAAGGTGGCGGCAGTGGCAAGGGCTCTGTCGCCCATGCCGATTTCGGCGTCGATTCAGTTGACCGGACAGTTGCCAGCTTGGAAAAGGGGTATAGGGAAGCCTATGAAATCAGTCAAGAAGTTTTATGAAGTTGAATATGCAGGACAAGGAGATGGAATTGCATATTCTGTTGGTGCCAATTTCTCGACTTACGTGCTTACAGTAAATGCTGGCGAGGATGTTACTATGAAGATTATGTCCTTCTCTCAACAGGGACACCGTGCTACATGCATTCTCTCTGCAAATGGCACAATTTCAAATGTTACACTTCGCCAACCGACTTCTTCTGGTGGTACTTTAACATATGAGGGACAGTTTGAGATTGTTTCCTTGTCTGGTTCGTTTATGCCAACCGAGAATGGATTGACAAAGAGCAGGTCCGGTGGGATGAGTGTCTCTTTGGTTGGTCCAGATGGCCGACTAATGGGTGGTGGTCTTGCTGGTTTGCTCGTAGCCGCAGGCCCTGTGCAGGTTGTTGTGGCCAGTTTTCTTCCAAGTCAAGAGCTGGAGCAGAAATCTAAGAGGCCAAGGATGGAGCATATATCAAATACTGCCACTACACATGTTAGTCCAATTTCTGCTGAAGAAATCAAAAACAGTTTTGGTGGAGTTAAGCCTATTATGGTTACAACTGATTTTCAAGTTGACAACTACGGTTCTTATAACAATGGTCAAGGCTCTAGGAACTTATCTGCTGATGATGAAGCTCCTTTACAAGACAAGGATTCTAACCCCACCCAATTAGGTGCTGCTGGAGTTGCATGCTAA 1062 0.4831 MEEREIFGSEHLVKGDEARESFHVASRTEDFMQFPGTAAELPAVAAEIPAVAAEIPTVAPVSSVVTPVTEGKKKRGRPRKYGPDGKVAAVARALSPMPISASIQLTGQLPAWKRGIGKPMKSVKKFYEVEYAGQGDGIAYSVGANFSTYVLTVNAGEDVTMKIMSFSQQGHRATCILSANGTISNVTLRQPTSSGGTLTYEGQFEIVSLSGSFMPTENGLTKSRSGGMSVSLVGPDGRLMGGGLAGLLVAAGPVQVVVASFLPSQELEQKSKRPRMEHISNTATTHVSPISAEEIKNSFGGVKPIMVTTDFQVDNYGSYNNGQGSRNLSADDEAPLQDKDSNPTQLGAAGVAC* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1142 353 Pfam Plants and Prokaryotes Conserved (PCC) domain 148 261 IPR005175 -
Lan8g1142 353 Gene3D - 147 281 - -
Lan8g1142 353 SUPERFAMILY AF0104/ALDC/Ptd012-like 145 263 - -
Lan8g1142 353 MobiDBLite consensus disorder prediction 318 353 - -
Lan8g1142 353 CDD DUF296 148 236 IPR005175 -
Lan8g1142 353 ProSiteProfiles PPC domain profile profile. 143 286 IPR005175 -
Lan8g1142 353 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 3 8 338 - -
Lan8g1142 353 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 8 338 IPR039605 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1142 Lan-Chr8 15407871 15414252 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1142 13 276 AT-hook Motif Nuclear Localized (AHL) Family AT5G62260 52.518 2.81e-79 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1142 - - gmx:102667678 372.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g1142 8 15407871 15414252 Lan8g0185 8 3138582 3143672 PCT
Lan8g1142 8 15407871 15414252 Lan20g0802 20 6978746 6983585 PCT
Lan8g1142 8 15407871 15414252 Lan4g1262 4 21204051 21208704 PCT
Lan8g0185 8 3138582 3143672 Lan8g1142 8 15407871 15414252 PCT
Lan20g0802 20 6978746 6983585 Lan8g1142 8 15407871 15414252 PCT
Lan4g1262 4 21204051 21208704 Lan8g1142 8 15407871 15414252 PCT