Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1097 ATGGCAGTTGCAAAACTCAAGGCCTCTGGCACTCAGAATGTCATGAAAATAGAAGACAAAATAGATACGATAATCAGTCAAGTGGTTGGCATAGAACCCTTCCTTTCCTTTCCAAGGGCCAGAGACAGCCATGTACAGTGGATTCATTTACTTCATGCTTTAAATCAGCAAGAACATCCAGGGTGGCCTTTGCTCTCCCCTATTCCCGTCAAGGTTCAATTGCTGAAGTGTGAAAAGTGCTCTCAAGAGTTTTGCTCCCCCATTAACTATAGAAGACACATACGTGTGCATCACCGACTGAAAAATCTTGCTAAGGATCATACAACAAATAGGGATCTTTTAGCAGCATATTGGGATAAGCTCTCTGTGGAAAAGGCAAAGGAAGTTGTATCATTCAATAATGTAATGCTGGAGGAAGTTCCAGGATCATCAGTTTTAAATGCTCTGACAATTCTTGTTCAAAGGCAAGTGTTTTCTTCATTTCCGCAGTCTTATGTGAGGGCCGGTGCTACCCTTTTGGATATTGTTAAATCTAATTCATCCATTTTTCCTATATCTTCTCAAGATTTGTTCAGTATTCTTGATGATGCTAGTGAAAAAACATGTTTATGTGGGACAACAGTGTCAATGCAAAGATATGTTTTTGGTGGAGAGGCTGGAAAAAATGGCCTTGAACCCAGAAACCTAGTTGCATGCACAAGTTTCTTGCTAGAGCAGAAATTGGTAAATGCATGGCTTGCTGACAAGGATGCTGAAGCATTGAGGTGCCAGAAGCAGCTAGTTGAGGAGGAAGAAGCTGCTCAGAAAAGACAAGCTGAGATTTTGGAGAGGAAACGCCACAAAAAGCTCAGACAAAAAGAACACAAGGTAAGAGAACAAAGGCATGGGGACAAGGCAAAAACTAAGCAGAACATTGACAGCACAGTAGAGGATTTAGCACCAGCAGAGTCATCTTTGGATACTTGTGCTTTTGAAGCACATAATCCTGATACATCTGTAGATAATGCTCCTTCACATGTACCTTCCCAATTCCATGGCACTAACGAAGGAATAGTTGGAGATACTCAGTCAGGGTATGATTTAGGCACTGATCAGAATATTGTGCGACAATCAGCACATGGACATAATCATCGGACAATACATGCCAAACGACAGGGAATGCTAAAACCACAATGGACTATAGCCAATGGTTTGCATGCAAGCCAGAATTCTCCAATTTCAAATCCTGACACCATTCAGAAATATGGAACCAAACATGATCAAAGTACAGCAGCTATATTTAATTGCAGTGAAGTATGGAGTCAAAAGCCTACAAGAGAAGTTGACATGGTGGTTTCAAAAGCTATAGTAGAGAAAGAAATAGACCAATGTAAGAATCCTGAAGTTTTAATAGGATCTATACCTGTCACTCTTGGACATTGCAGCCAATTGGAGGGCAATGCAGTGGCATTTCGAGAGGATGTCGTGGTTGAGAATCTGGTCAAGGAGAATAGTTCTCAGGATAAACCAATGAAACCTGATTTTGACCAGAACGGCAACAATCATCCAACATTGAAATTTTGGAGGCCACTTGGCAGGCATGACAATAAAAATCCATTAGCAGTTAATAGAGGTGGGCCAGAAGCTGATGCAGTTTATGTTAATGAAGATAGTCAAAATTTGTCAGGTCCAAGTAGTTTAAGGTCGTGCAGTATAGATGGTAGTGATATTTGTTCTGAGAACAATTCCCCCCATCCAGAGGGCAGAGTGGAACCAGGAAGCTTACTTTTATCCAGCCATGCTGCAAGAGATTTTCTTGCACAAAGATGGAAAGAAGCTCTTTCATTAGATCATGTGAAATTGGTTATTTCCCCCATTTCTGAACCTCCTAGGCGCCAGAAGACACGTGATTCCAAAGTAGTGGTTGGTCAATATTCTGACGCTGTCAAATCCAATGTTCATGCAAATGCAGAGAGCCGGTTGCCTGCAACCTCGGGAGTTACCAAGTCCAAACCCAGAGCGAAGCCTGAAAAGGGAACCAAGACAAAGTATATTCCCAAACAAAAAACAACCACCTAA 2058 0.4159 MAVAKLKASGTQNVMKIEDKIDTIISQVVGIEPFLSFPRARDSHVQWIHLLHALNQQEHPGWPLLSPIPVKVQLLKCEKCSQEFCSPINYRRHIRVHHRLKNLAKDHTTNRDLLAAYWDKLSVEKAKEVVSFNNVMLEEVPGSSVLNALTILVQRQVFSSFPQSYVRAGATLLDIVKSNSSIFPISSQDLFSILDDASEKTCLCGTTVSMQRYVFGGEAGKNGLEPRNLVACTSFLLEQKLVNAWLADKDAEALRCQKQLVEEEEAAQKRQAEILERKRHKKLRQKEHKVREQRHGDKAKTKQNIDSTVEDLAPAESSLDTCAFEAHNPDTSVDNAPSHVPSQFHGTNEGIVGDTQSGYDLGTDQNIVRQSAHGHNHRTIHAKRQGMLKPQWTIANGLHASQNSPISNPDTIQKYGTKHDQSTAAIFNCSEVWSQKPTREVDMVVSKAIVEKEIDQCKNPEVLIGSIPVTLGHCSQLEGNAVAFREDVVVENLVKENSSQDKPMKPDFDQNGNNHPTLKFWRPLGRHDNKNPLAVNRGGPEADAVYVNEDSQNLSGPSSLRSCSIDGSDICSENNSPHPEGRVEPGSLLLSSHAARDFLAQRWKEALSLDHVKLVISPISEPPRRQKTRDSKVVVGQYSDAVKSNVHANAESRLPATSGVTKSKPRAKPEKGTKTKYIPKQKTTT* 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1097 685 MobiDBLite consensus disorder prediction 495 515 - -
Lan8g1097 685 Coils Coil 251 278 - -
Lan8g1097 685 MobiDBLite consensus disorder prediction 640 685 - -
Lan8g1097 685 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 684 - -
Lan8g1097 685 MobiDBLite consensus disorder prediction 642 659 - -
Lan8g1097 685 MobiDBLite consensus disorder prediction 290 305 - -
Lan8g1097 685 SMART c2h2final6 75 97 IPR013087 -
Lan8g1097 685 ProSiteProfiles Zinc finger C2H2 type domain profile. 75 102 IPR013087 -
Lan8g1097 685 MobiDBLite consensus disorder prediction 276 308 - -
Lan8g1097 685 ProSitePatterns Zinc finger C2H2 type domain signature. 77 98 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1097 Lan-Chr8 14311906 14319276 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1097 19 682 C2H2 Transcription Factor Family AT4G25610 38.782 3.68e-124 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan8g1097 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0956 7 9319459 9327163 Lan8g1097 8 14311906 14319276 LSH
Lan8g1097 8 14311906 14319276 Lan4g1858 4 27020412 27027108 LSH
Lan7g0956 7 9319459 9327163 Lan8g1097 8 14311906 14319276 PCT
Lan8g1097 8 14311906 14319276 Lan8g1097 8 14311906 14319276 PCT
Lan8g1097 8 14311906 14319276 Lan4g1858 4 27020412 27027108 PCT
Lan8g1097 8 14311906 14319276 Lan7g0956 7 9319459 9327163 PCT
Lan4g1858 4 27020412 27027108 Lan8g1097 8 14311906 14319276 PCT